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jodyphelan
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TBProfiler
Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data
GNU General Public License v3.0
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Why are genes not associated with drug resistance included in tbdb.bed?
#378
mariaelf97
opened
1 day ago
1
QC metrics
#377
thanadon1437
opened
4 days ago
5
update_tbdb-Unable to update the database
#376
BhawnaY16
closed
5 days ago
2
inconsistency between Resistance report and Resistance variants report
#375
alantsangmb
opened
5 days ago
0
TBProfiler Dealing with 1S6110 insertions
#374
vrennie
opened
6 days ago
5
Clarification on 'qc' variants
#373
vrennie
closed
6 days ago
16
Clarificz
#372
vrennie
closed
1 week ago
0
ERROR MESSAGE
#371
tuelomogashoa
opened
1 week ago
17
Dev
#370
jodyphelan
opened
1 week ago
0
Problem in running the profile pipeline
#369
ngs12321sgn
opened
3 weeks ago
1
Rifampin resistance rpoB_p.Pro454Ser
#368
bajwamoneeb
opened
1 month ago
5
[E::bcf_hdr_read] Input is not detected as bcf or vcf format
#367
schorlton-bugseq
opened
1 month ago
1
iTOL files not created
#366
moks-micro
opened
1 month ago
4
Cannot perform lineage and spoligotype in v6.2.1
#365
thanadon1437
opened
1 month ago
2
itol collate readme
#364
marvinkobit
closed
1 week ago
1
cannot find in Anacodon
#363
alantsangmb
closed
1 month ago
2
Cannot profile the nanopore file
#362
thanadon1437
closed
1 month ago
6
bump version
#361
jodyphelan
closed
1 month ago
0
Dev
#360
jodyphelan
closed
1 month ago
0
Merge dev
#359
jodyphelan
closed
1 month ago
0
Add stop lost variants to hgvs parsing
#358
jodyphelan
closed
1 month ago
0
Samclip use
#357
jodyphelan
closed
1 month ago
0
Close Samples
#356
jodyphelan
closed
1 month ago
0
version 6.2.0 error in lineage prediction
#355
alantsangmb
closed
1 month ago
4
Temporary files
#354
MarcNiebel
closed
1 month ago
2
Update tbdb with user-specified reference genome doesn’t work
#351
ryanjameskennedy
opened
2 months ago
1
update CI
#350
jodyphelan
closed
2 months ago
0
Dev
#349
jodyphelan
closed
2 months ago
0
update testing
#348
jodyphelan
closed
2 months ago
0
Dev
#347
jodyphelan
closed
2 months ago
0
Prediction issue
#346
RehmanZaira
closed
1 month ago
6
Issue with Pathogen Profiler combine_vcf_variants.py script
#345
taranewman
closed
2 months ago
16
Variant reported at wrong frequency
#344
insapathogenomics
opened
2 months ago
2
Unreported deletion in pncA gene
#343
insapathogenomics
opened
2 months ago
1
v6.2.0 not reporting "missing positions report"
#342
insapathogenomics
opened
2 months ago
2
Question about source of tbdb.spoligotype_list.csv
#341
RikkeMLarsen
opened
2 months ago
1
Question about tbdb.barcode.bed coordinates
#340
mariaelf97
opened
3 months ago
4
v6.2.0 fails to import tbdb (whov2)
#339
abhi18av
closed
2 months ago
2
QC failed variants report
#338
alantsangmb
closed
2 months ago
1
`tb-profiler update_tbdb --match_ref` fails
#337
schorlton-bugseq
closed
1 month ago
11
Dev
#336
jodyphelan
closed
3 months ago
0
Dev
#335
jodyphelan
closed
3 months ago
0
Issue with QC failed variants report, Missing positions report and Analysis pipeline specifications in TBProfiler v6.0.0
#334
alantsangmb
closed
3 months ago
1
Enabling strict WHO database mode
#333
vrennie
opened
3 months ago
2
Dev
#332
jodyphelan
closed
3 months ago
0
Missing Fluoroquinolone profile in the itol reports
#331
emilyncosta
closed
3 months ago
5
parallel: Error
#330
huihuigogo
opened
4 months ago
1
Issue with TB-Profiler Web Version: Uploading FASTQ.GZ Files Fails
#329
Bowmore12
closed
3 months ago
2
No module found error
#328
Michaelijesse
closed
4 months ago
0
TypeError: Parallel.__init__() got an unexpected keyword argument 'return_as
#327
FrancisFCHsu
closed
2 months ago
1
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