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# Word cloud as heatmap annotation - A Bioinformagician
[https://jokergoo.github.io/2020/05/31/word-cloud-as-heatmap-annotation/](https://jokergoo.github.io/2020/05/31/word-cloud-as-heatmap-annotat…
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Hello! I am trying to run a Pathway GSEA, but have been facing issues with the correct formatting of the geneList argument. Through the Biomedical Knowledge Mining using GOSemSim and clusterProfiler p…
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https://mp.weixin.qq.com/s/YFqLko9q-YYJ9jkhP3Wsww
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https://github.com/JuliaPlots/PlotlyJS.jl/blob/master/src/kaleido.jl
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Oh hi Mark,
First of all, thank you so much for your help on Twitter. I'd never heard of this tool, and it turns out to work very well for what we need. For context, we have 71 samples and roughly 20…
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To estimate pathway enrichment profiles of clusters, I was trying to run `CalculatePWProfiles` on a dataset and got into an error.
After reading the R code in `CalculatePWProfiles`, I realized the…
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https://mp.weixin.qq.com/s/puv7hWGyNJYW1pUnQ7WwMA
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https://mp.weixin.qq.com/s/puv7hWGyNJYW1pUnQ7WwMA
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When I ran sc.metabolism.Seurat with method ssgsea or gsea (), there was an error as follows:
Error in sc.metabolism.Seurat(obj = countexp.Seurat, method = "gsea", :
object 'signature_exp' not…
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https://mp.weixin.qq.com/s/Wisfj7TmD4-jOwV1skxppw