-
Hello,
Thank you for providing this tool - we'll be working with 141 highly degraded (majority are RIN < 5.0) human RNAseq samples that would really benefit from this normalization approach. In pre…
-
**Snakemake version**
7.20.0
**Describe the bug**
Unexpected error when submitting a job to `slurm`.
**Logs**
```bash
srun: unrecognized option '--cpu-bind=q'
```
**Minim…
-
## User story
- _As an admin creating a cluster or node pool, I want to make an informed decision when selecting a machine type to use for nodes._
## Details
Currently we offer all available …
-
After publishing our preprint [`Practical computational reproducibility in the life sciences`](https://www.biorxiv.org/content/early/2017/10/11/200683) it is time to discuss the next steps.
One pro…
-
@ax3l BTW i created different singularity definition files which could eventually allow any user to run WarpX on any HPC system which provide singularity/apptainer as container technique.
Defintiion…
-
Greetings,
I have been using SCS 2.1.0 with YALMIP in Matlab to solve the small to medium instances of my SDP.
For the large instances, I simply don't have enough memory to store the matrix A (eve…
-
Hi,
I wish to download some shared datasets in DNAnexus to my own university cluster. I am using this software to do the same. I have been trying to download this client on my cluster, but I am cau…
-
Hello,
I am using this cookiecutter template with the last snakemake and SLURM.
For pipelines that spawn jobs that takes a small amount of time to be executed (eg 30 or less seconds), even spaw…
-
# Description of item
Provide infrastructure for [CuPy](https://cupy.dev/) implementation
- [ ] Integrate CuPy
- [ ] Change/create necessary functions
- [ ] Modify documentation acc…
-
Hi.
I have been using the 3.7 Windows CUDA binary release for testing purposes on my laptop (small image sets etc), although I have recently installed 3.8 COLMAP with CUDA on our HPC installation …