issues
search
Snakemake-Profiles
/
slurm
Cookiecutter for snakemake slurm profile
MIT License
126
stars
44
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Setting out based on log directive from snakemake
#120
shashwatsahay
opened
4 days ago
0
Side car goes into infinite loop for simple test snakemake workflow
#119
shashwatsahay
closed
4 days ago
1
Append top level job name to rule-based job name
#118
CJREID
closed
4 months ago
2
Compatibility with snakemake version 8.0 and higher
#117
TBradley27
opened
11 months ago
11
Specify only one output file
#116
robinfallegger
closed
1 month ago
0
Fix sidecar index out of range issues
#115
mbhall88
closed
1 year ago
3
Update test architecture
#114
percyfal
closed
1 year ago
0
Error spam (list index out of range, could not query sidecar)
#113
nienkevanunen
closed
1 year ago
4
How do I make mem_mb_per_cpu work?
#112
hepcat72
opened
1 year ago
8
slurm-status.py: could not query side car
#111
mhorlacher
opened
1 year ago
0
Snakemake and Slurm
#110
mweberr
opened
1 year ago
1
Jobs submitted to cluster fail without explanation
#109
jonahcullen
opened
1 year ago
9
pick the larger settting for resource
#108
y9c
opened
2 years ago
0
`mem` setting in resource is not working due to default `mem_mb` argument is generated in latest version of snakemake
#107
y9c
opened
2 years ago
3
Add compatibility for --immediate-submit flag
#106
GaspardR
opened
2 years ago
0
update default cluster logpath
#105
mbhall88
closed
2 years ago
0
slurm fails when log path contains a Wildcards string that is a directory
#104
maarten-k
closed
2 years ago
8
How to use with MPI jobs?
#103
bilke
opened
2 years ago
1
Profile not working well on AWS ParallelCluster with Slurm
#102
cbrueffer
opened
2 years ago
0
use explicit username instead of --me
#101
esrice
closed
1 year ago
3
Allow settings to come from environment
#100
holtgrewe
closed
2 years ago
1
Sidecar shuts down too early when pressing Ctrl-C
#99
holtgrewe
opened
2 years ago
1
Suppressing HTTP log requests
#98
holtgrewe
closed
2 years ago
0
Provided cores differ to what's passed in the CLI
#97
vinisalazar
opened
2 years ago
1
sidecar crashes when parsing malformed response
#96
messersc
closed
2 years ago
7
Improved ergonomics and control
#95
mbhall88
closed
2 years ago
5
SLURM --tasks-per-node, --cpus-per-task, etc.
#94
whophil
opened
2 years ago
2
Deprecate advanced args
#93
percyfal
closed
2 years ago
0
Slurm sidecar ci update
#92
percyfal
closed
2 years ago
0
Deprecate advanced argument conversion
#91
percyfal
closed
2 years ago
0
How to specify --output= Slurm parameter?
#90
holtgrewe
closed
2 years ago
2
Problems with Snakemake 5.6.0 standard resources
#89
holtgrewe
opened
2 years ago
4
Is config.yaml considered the new cluster_config?
#88
ftabaro
closed
2 years ago
2
Fails with many input files
#87
alanocallaghan
closed
2 years ago
7
Specifying GRES (gpu, local storage) and constraints
#86
holtgrewe
closed
2 years ago
1
Adding support for Snakemake v7 --slurm-sidecar
#85
holtgrewe
closed
2 years ago
11
Update documentation on cluster-config and resources.
#84
percyfal
closed
2 years ago
0
Test resources partition key
#83
percyfal
closed
2 years ago
0
Update runners
#82
percyfal
closed
2 years ago
0
cluster-status should use squeue --iterate
#81
holtgrewe
closed
2 years ago
3
add more option on config.yaml
#80
sravel
closed
2 years ago
2
slurm_utils.py submit_job function is very slow
#79
atermanini
opened
3 years ago
13
Add "partition" to resource mapping
#78
tdido
closed
2 years ago
3
Why the resources are not taken from the slurm configuration?
#77
ekushele
closed
2 years ago
5
Getting "/bin/sh: slurm-status.py: command not found" error
#76
anilthanki
closed
2 years ago
3
using conda with config without global snakemake install
#75
LZeitler
closed
3 years ago
4
sacct running continuously
#74
rmvpaeme
closed
2 years ago
3
A simple alternative profile with a single config file
#73
jdblischak
closed
2 years ago
6
Set status of suspended jobs to running
#72
percyfal
closed
3 years ago
0
Suspend should be considered running.
#71
cErikson
closed
3 years ago
0
Next