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Hi,
I'm having some frustrating problems.
My first problem is: I counted cells manual (negative and positive), and then ran the 'positive cell detection' on my ROI. Thereafter, Qupath did not save …
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I'm testing out TexturedCubeExample on Arch with the VulkanRenderer. When I toggle to VR mode I get:
```
/usr/lib/jvm/default-runtime/bin/java -ea -Dscenery.Renderer=VulkanRenderer -Xms512m -Xmx51…
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I am building a image process framework ImagePy, If you know ImageJ, then ImagePy is ImageJ(Python) but more simpler and pythonic, which based on plugin, and generate friendly interaction. what more, …
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Hi,
Is it possible to export "contours" delineating different cell types from one another in quPath (or possible to access some data which might make that easy enough to script? I realize that quPa…
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Hi guys,
first of all congratulations to the 5.3.0 release. I really happy to see this happening. Nevertheless I have some questions. In the webpage it is stated:
"added two options to the CZI r…
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After updating to latest FIJI I get the following exception/stack trace; it all worked a few weeks ago when I last updated my local Fiji. This is likely related to PR #118 and I'll need to investigat…
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It is interpreted a a parameter in xmipp programs and may be others
Possible solutions:
escape special characters
pass file names as between ""
...
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@LWollatz, @aherbert,
When looking at redundancies between the BAR update site and other update sites on http://sites.imagej.net/, I noticed the following:
The LungJ and GDSC update sites both fe…
tferr updated
7 years ago
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Hi,
I wanted to try using ClearMap and installed Java-8, ImageJ and installed ClearVolume plugin (ImageJ 2.0.0-rc-43/1.51o; Java 1.8.0_131 [64-bit]; Mac OS X 10.12.1).
When I try "Open in ClearV…
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Hi Bruno,
I'm trying to parse Simi biocell files in ImageJ and I came across your code. I wonder could you let me know the interpretation of the headers in the .sbd files? I'm having trouble interp…