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Hi,
Actually, I met a problem in running “splam score” with mouse specie even in example given by the website (https://ccb.jhu.edu/splam/content/generalization.html):
Command:
splam score -A GRC…
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Ran detect_errrors.py on PDB 8faz and EMDB map 28961
detect_errors.py --pdb 8faz.pdb --map emd_28961.map --reso 2.3 -j 1
and it failed because of use of the deprecated (and now removed numpy.boo…
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Hi,
I am attempting to run DegNorm on some human RNA-seq data that I aligned using hisat2. It is able to load the files and the GTF, but consistently gives me the error below after it starts loadin…
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Right now the Galaxy `single_user` setting (used in anvil-based galaxies, and elsewhere) provides options that are not relevant in a single user setting where the upstream header is just trusted and *…
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Hi, thanks for the great works.
I tried to use the time series to create charts, and I discovered that at least for France (state), France (country) the data is not accurate. It says that the number …
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Hi,
Trying to build splice sites and exon files for HISAT2 using the hisat2_extract_splice_sites.py script and chess2.1_assembly.gff file (transformed into GTF format via Bioconductor's rtracklayer…
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The last update was at 8:33AM CST, are there not going to be real-time updates going forward?
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Hi @aganezov,
I'm trying to merge two assemblies resulted from different settings with Supernova. Since I have fasta file I think I have to convert them in point formatted file by running `fasta2ca…
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last error in stack trace upon visiting http://127.0.0.1:8000/docs (which gives 500 error):
```
raise PydanticInvalidForJsonSchema(f'Cannot generate a JsonSchema for {error_info}')
pydantic.e…
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Currently the python scripts in the `./scripts/` folder do not seem to strictly follow any linting, formatting, typing or style guide, docstrings are often missing and no configuration files to ensure…