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Hi,
I tried to open a few sbml models from the biomodels databse using the "Import SBML" functionality in MoBi but it doesn't work and every time I get this error:
Application:
MoBi 7.1.0 - Build 6…
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Hi all,
I would like to implement in the next few weeks a better SED-ML support in Tellurium.
Currently the `tesedml.py` is a complete mess and in my opinion beyond repair. It will be much more work …
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### Problem description
I'm following the [instructions](http://carveme.readthedocs.io/en/latest/installation.html) to install carveme and the carveme_init script fails with a "Connection reset by …
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#### Problem description
I imported a Matlab model. All of the functions work fine, except the attributes of the reactions. When I entered the attribute for any reaction (e.g. mc_model.reactions.A:3D…
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#### Problem description
Please explain:
* **what** you tried to achieve,
* **how** you went about it (referring to the code sample), and
* **why** the current behaviour is a problem and what ou…
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vincent told me that there would be an issue adding metadata to numl documents.
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#### Problem description
Hi,
I just noticed that the Solution.objective_value and Solution.fluxes[objective_id] differ in pfba.
See snippet below that replicate the problem.
#### Code Sample
…
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### Problem description
After creating a model, I exported it to SBML and then loaded the model into cobrapy. The cobrapy.io.read_sbml_file() generated a warning for several metabolites because the…
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### Problem description
When the -r option is specified, the carve command fails with a "unrecognized arguments" error.
I have a fix. Are you willing to accept pull requests?
### Actual outpu…