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sys-bio
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tellurium
Python Environment for Modeling and Simulating Biological Systems
http://tellurium.analogmachine.org/
Apache License 2.0
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boundary and floating species
#593
ahmedibatta
opened
1 week ago
3
example for ParameterScan from docs broken
#592
SchwarzMarek
opened
1 month ago
0
Parallelization issues with pocoMC
#591
lisaotten
opened
1 month ago
7
Is it possible to create a discussion tab?
#587
LifeWorks
closed
3 months ago
2
Allow log plots in SED-ML
#586
luciansmith
opened
6 months ago
1
setSeed and getSeed functions are updated according to the latest roadrunner changes
#585
adelhpour
opened
7 months ago
0
Update for python 3.12
#584
luciansmith
closed
8 months ago
0
Reactions producing multiple copies of the same molecule don't work
#583
FFroehlich
closed
8 months ago
6
Search odd for tellurium readthedocs
#582
luciansmith
opened
8 months ago
1
Output selection on model with compartment volume set causes scaling of initial species concentrations.
#581
SchwarzMarek
closed
8 months ago
5
2.2.9
#580
luciansmith
closed
9 months ago
0
ODE simulations fail to handle piecewise functions when starting from an equilibrium state
#579
yjzhang
closed
21 hours ago
6
New release
#578
luciansmith
closed
9 months ago
0
GitHub actions workflow is created
#577
adelhpour
opened
9 months ago
0
Fix SED-ML interpretation of multiple repeated subtasks
#576
luciansmith
opened
10 months ago
0
'xtitle' and 'ytitle' occurrences are renamed to 'xlabel' and 'ylabel,' respectively
#575
adelhpour
closed
9 months ago
1
libncurses5 no longer available on Ubuntu23.10
#574
cfblaeb
closed
9 months ago
2
instructions on how to use tellurium with Thonny for both Windows and…
#573
luciansmith
closed
11 months ago
1
What's the best way of modelling changing volumes?
#572
julibeg
opened
12 months ago
5
Fixed typo
#570
harveymannering
closed
1 year ago
1
Import fails on Colaboratory
#569
swaldherr
closed
1 year ago
5
installation issue
#568
Pellarin
closed
1 year ago
5
Release for 2.2.8
#567
luciansmith
closed
1 year ago
0
SED-ML: Repeated task output not exported correctly
#566
luciansmith
opened
1 year ago
0
Push changes to release.
#565
luciansmith
closed
1 year ago
0
SED-ML python script creation adds 'np.nan' to variable names
#564
luciansmith
closed
1 year ago
1
multiprocessing parallelization and deep copy gives unexpected results
#563
augeorge
opened
1 year ago
2
Tellurium not possible to install
#562
jurquiza
closed
1 year ago
7
Bug in SED-ML interpretation
#561
luciansmith
closed
1 year ago
1
Update for latest release.
#560
luciansmith
closed
2 years ago
0
Allow loading one model from another in sedml.
#559
luciansmith
closed
2 years ago
0
Merge for new maintenance release.
#558
luciansmith
closed
2 years ago
0
Error concerning "unexpected name of existing function" in reaction definition of antimony model
#557
Koenvz98
closed
1 year ago
2
Creating submodular reactions on python using Antimony
#556
MikalD
closed
2 years ago
8
Simulating stoichiometry with unknown coefficients
#555
janursa
closed
1 year ago
5
"Unexpected '\'' " error from an antimony model
#554
freiburgermsu
closed
2 years ago
6
Support SBML Level 3 Version 2
#553
UnkindPartition
closed
1 year ago
12
Update version number; add another memory fix for Antimony.
#552
luciansmith
closed
2 years ago
0
Bug in latest tellurium install
#550
hsauro
closed
2 years ago
1
Possible bug with r.removeSpecies ('Sx') were Sx is part of an assignment
#549
hsauro
closed
2 years ago
1
Add documentation on piecewise to Antimony docs
#548
hsauro
opened
2 years ago
0
cannot install Tellurium on Mac (OS 10.12)
#547
htahir2
closed
2 years ago
2
2.2.0 isn't tagged on GitHub but is released on PyPI
#544
yurivict
closed
2 years ago
1
Add seed to constructor of Gillespie in Python
#543
CiaranWelsh
opened
3 years ago
1
Bug using exportToMatlab. :bug:
#540
fernandonobel
closed
2 years ago
4
Is the documentation on the Gillepsie method correct?
#541
hsauro
closed
2 years ago
1
Raise errors on unrecognized KiSAO algorithm parameters
#539
jonrkarr
opened
3 years ago
0
Map additional parameters of NLEQ2 to KiSAO terms
#538
jonrkarr
closed
2 years ago
2
Euler method could be mapped to KISAO_0000030
#537
jonrkarr
closed
2 years ago
1
Map a KiSAO term to the non-negative option of the Gillespie method
#536
jonrkarr
closed
2 years ago
1
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