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Hello,
I stumbled across your code while looking up Minhashing. I was wondering if there is a way to access the Minhash object to retrieve the hashes?
thanks,
ara
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I've been using Mash with great success with plant read data, but I'm running into one weirdness. Some of my cultivars cluster in a way they shouldn't and I believe this is due to chloroplast differen…
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Looking at @kevincobain2000's jProcessing library for Japanese, there are two useful functions that I would like to take from his library.
1. Longest common string
Docs: http://jprocessing.readthed…
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Hi Eric,
How are you using this package yourself, since it does not implement any specific locality-sensitive hash function? I.e., I want to know which hash function you are using now to go with it.…
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Cryptographic hashes (MD5, SHA1, SHA256, bcrypt) are designed to produce very different outputs when the inputs have only a small variation. There are hashes out there that can do the opposite. Given …
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I've put together a quick notebook showing how to get at the hashes from the sourmash YAML output file.
It's available here:
https://github.com/bioinfonm/bat_metagenomics_2016/blob/master/python_code…
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Hi @dgryski,
> This package works best when provided with a strong 64-bit hash function, such as CityHash, Spooky, Murmur3, or SipHash.
Would you give a simple demo code how to use the `go-minhash`…
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There is something going on with some of the data-structures we have here: BloomFilter is a kind of approximate Set. HyperLogLog is an approximate set with Cardinality. Count-min-sketch is an approxim…
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I draw several fatal errors when I try to run what seems like a reasonable thing here.
```
git clone {repo}/sourmash.git
cd sourmash
pip install . pytest matplotlib
py.test .
```
Here is the top few…
jkahn updated
8 years ago
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```
❯❯❯ pip3 install sourmash
…
running build_ext
building 'sourmash_lib._minhash' extension
creating build/temp.linux-x86_64-3.5
creating build/temp.linux-x86_64-3.5/sourmash_lib
…