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sourmash-bio
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sourmash
Quickly search, compare, and analyze genomic and metagenomic data sets.
http://sourmash.readthedocs.io/en/latest/
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add rust sig building utilities
#3406
bluegenes
opened
1 day ago
0
wasm sketching sets `null` filename and missing `name`.
#3405
mr-eyes
opened
1 day ago
0
[pre-commit.ci] pre-commit autoupdate
#3404
pre-commit-ci[bot]
closed
1 day ago
1
Bump serde from 1.0.214 to 1.0.215
#3403
dependabot[bot]
opened
3 days ago
1
Bump serde_json from 1.0.132 to 1.0.133
#3402
dependabot[bot]
opened
3 days ago
1
Bump DeterminateSystems/nix-installer-action from 15 to 16
#3401
dependabot[bot]
closed
1 day ago
2
write up rationale for .sig.zip files over JSON files
#3400
ctb
opened
5 days ago
0
MRG: bump sourmash core to r0.17.2
#3399
ctb
closed
6 days ago
1
adjust `ZipStorage::from_file` to pass errors up on bad zip file
#3398
ctb
opened
1 week ago
0
MRG: enforce a single scaled on a `CollectionSet`
#3397
ctb
closed
6 days ago
2
Build Custom Database
#3396
agombolay
opened
1 week ago
2
EXP: skipmers
#3395
bluegenes
opened
1 week ago
9
EXP: avoid cloning in gather, use iterators directly
#3394
luizirber
opened
1 week ago
1
[pre-commit.ci] pre-commit autoupdate
#3393
pre-commit-ci[bot]
closed
1 week ago
1
build: simplify Rust release
#3392
luizirber
closed
1 week ago
1
Bump tempfile from 3.13.0 to 3.14.0
#3391
dependabot[bot]
closed
1 week ago
2
Bump csv from 1.3.0 to 1.3.1
#3390
dependabot[bot]
closed
1 week ago
1
Bump thiserror from 1.0.68 to 2.0.3
#3389
dependabot[bot]
closed
1 week ago
1
MRG: release core r0.17.1
#3388
ctb
closed
1 week ago
1
MRG: change `sig_from_record` to use scaled from `Record` to downsample
#3387
ctb
closed
1 week ago
3
how do we get `scaled` from a `RevIndex`?
#3386
ctb
closed
5 days ago
4
fix: Avoid re-calculating md5sum on clone and conversion to KmerMinHashBTree
#3385
luizirber
closed
1 week ago
1
`Selection::from_record` does not respect `scaled`
#3384
ctb
closed
1 week ago
5
upgrade rocksdb to 0.22.0
#3383
mr-c
closed
1 week ago
5
error publishing wasm package for r0.17.0
#3382
ctb
closed
1 week ago
2
MRG: update sourmash core to r0.17.0
#3381
ctb
closed
2 weeks ago
1
[pre-commit.ci] pre-commit autoupdate
#3380
pre-commit-ci[bot]
closed
2 weeks ago
1
Bump thiserror from 1.0.65 to 1.0.68
#3379
dependabot[bot]
closed
2 weeks ago
2
Bump twox-hash from 1.6.3 to 2.0.1
#3378
dependabot[bot]
closed
1 week ago
1
Bump histogram from 0.11.0 to 0.11.1
#3377
dependabot[bot]
closed
2 weeks ago
1
Bump needletail from 0.5.1 to 0.6.0
#3376
dependabot[bot]
closed
2 weeks ago
1
Update pytest-cov requirement from <6.0,>=4 to >=4,<7.0
#3375
dependabot[bot]
closed
2 weeks ago
2
Bump DeterminateSystems/nix-installer-action from 14 to 15
#3374
dependabot[bot]
closed
2 weeks ago
1
Bump conda-incubator/setup-miniconda from 3.0.4 to 3.1.0
#3373
dependabot[bot]
closed
2 weeks ago
2
EXP: Implement `into_iter()` on `Collection`
#3372
ctb
opened
2 weeks ago
0
Saving extra metadata in signature format
#3371
mr-eyes
opened
2 weeks ago
6
Sketch of `k=51` returns 0 hashes
#3370
ccbaumler
closed
3 weeks ago
2
[pre-commit.ci] pre-commit autoupdate
#3369
pre-commit-ci[bot]
closed
3 weeks ago
1
Bump serde from 1.0.210 to 1.0.214
#3368
dependabot[bot]
closed
3 weeks ago
2
Bump thiserror from 1.0.64 to 1.0.65
#3367
dependabot[bot]
closed
3 weeks ago
2
upgrade to newer maturin
#3366
mr-c
closed
3 weeks ago
2
disabling `branchwater` feature leads to Python test error: symbol 'revindex_free' not found in library … _lowlevel.so: undefined symbol: revindex_free
#3365
mr-c
opened
3 weeks ago
7
MRG: standardize on u32 for scaled, and introduce `ScaledType`
#3364
ctb
closed
2 weeks ago
5
regularized 'scaled' type in Rust code
#3363
ctb
closed
2 weeks ago
0
EXP: debug collection downsampling
#3362
ctb
closed
3 weeks ago
2
improve sourmash tax metagenome lingroup output
#3361
bluegenes
opened
4 weeks ago
0
[pre-commit.ci] pre-commit autoupdate
#3360
pre-commit-ci[bot]
closed
1 month ago
1
Bump twox-hash from 1.6.3 to 2.0.0
#3359
dependabot[bot]
closed
2 weeks ago
1
Bump serde_json from 1.0.128 to 1.0.132
#3358
dependabot[bot]
closed
1 month ago
1
Fix clippy lints from 1.83 beta
#3357
luizirber
closed
1 month ago
2
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