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sourmash-bio
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sourmash
Quickly search, compare, and analyze genomic and metagenomic data sets.
http://sourmash.readthedocs.io/en/latest/
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MRG: release sourmash rust core r0.16.0
#3356
ctb
closed
1 month ago
1
create a downsampled iterator so that downsampling becomes less dependent on `clone`
#3355
ctb
opened
1 month ago
2
Bump web-sys from 0.3.70 to 0.3.72
#3354
dependabot[bot]
closed
1 month ago
2
Bump pypa/cibuildwheel from 2.21.2 to 2.21.3
#3353
dependabot[bot]
closed
1 month ago
1
MRG: refactor `calculate_gather_stats` to disallow repeated downsampling
#3352
ctb
closed
1 month ago
2
remove match_
#3351
luizirber
opened
1 month ago
3
CI: use supported ubuntu for codspeed
#3350
luizirber
closed
1 month ago
1
workflow to convert (many) .sig/.sig.gz files to .sig.zip files + mf.csv files
#3349
ctb
opened
1 month ago
1
feat: Implement TryInto to convert Signature and SigStore into KmerMinHash
#3348
luizirber
closed
1 month ago
1
change `sourmash.VERSION` to `sourmash.__version__`
#3347
ctb
opened
1 month ago
0
[pre-commit.ci] pre-commit autoupdate
#3346
pre-commit-ci[bot]
closed
1 month ago
1
Bump pypa/cibuildwheel from 2.21.1 to 2.21.2
#3345
dependabot[bot]
closed
1 month ago
2
MRG: derive Hash for `HashFunctions`
#3344
bluegenes
closed
1 month ago
2
`downsample_*` functions in minhash.rs _always_ downsample, even when downsampling is not necessary
#3343
ctb
closed
1 month ago
3
MRG: improve downsampling behavior on `KmerMinHash`; fix `RevIndex::gather` bug around `scaled`.
#3342
ctb
closed
1 month ago
4
[pre-commit.ci] pre-commit autoupdate
#3341
pre-commit-ci[bot]
closed
1 month ago
1
Bump tempfile from 3.12.0 to 3.13.0
#3340
dependabot[bot]
closed
1 month ago
2
returning more & richer information from rust `SeqToHash` struct/iterator
#3339
ctb
opened
1 month ago
0
MRG: update sourmash core to r0.15.2
#3338
ctb
closed
1 month ago
1
How to online sketch an SRA accession without downloading?
#3337
mr-eyes
opened
1 month ago
1
[pre-commit.ci] pre-commit autoupdate
#3336
pre-commit-ci[bot]
closed
1 month ago
1
Bump thiserror from 1.0.63 to 1.0.64
#3335
dependabot[bot]
closed
1 month ago
2
Bump rkyv from 0.7.44 to 0.8.8
#3334
dependabot[bot]
closed
1 month ago
2
MRG: panic when `FSStorage::load_sig` encounters more than one `Signature` in a JSON record
#3333
ctb
closed
2 weeks ago
4
Bump pypa/cibuildwheel from 2.20.0 to 2.21.1
#3332
dependabot[bot]
closed
2 months ago
1
Bump rkyv from 0.7.44 to 0.8.5
#3331
dependabot[bot]
closed
1 month ago
2
[pre-commit.ci] pre-commit autoupdate
#3330
pre-commit-ci[bot]
closed
2 months ago
1
Bump pypa/cibuildwheel from 2.20.0 to 2.21.0
#3329
dependabot[bot]
closed
2 months ago
3
Bump getset from 0.1.2 to 0.1.3
#3328
dependabot[bot]
closed
2 months ago
2
Bump rkyv from 0.7.44 to 0.8.4
#3327
dependabot[bot]
closed
2 months ago
2
Bump memmap2 from 0.9.4 to 0.9.5
#3326
dependabot[bot]
closed
2 months ago
1
MRG: have ruff ignore ipynb so as to avoid triggering an error during CI
#3325
ctb
closed
2 months ago
1
Bump codspeed-criterion-compat from 2.6.0 to 2.7.2
#3324
dependabot[bot]
closed
2 months ago
2
Bump rkyv from 0.7.44 to 0.8.3
#3323
dependabot[bot]
closed
2 months ago
3
how to intersect sig details for template signatures?
#3322
bluegenes
opened
2 months ago
1
consider how to support more flexible `Collection` in `RevIndex` for external storage
#3321
ctb
opened
2 months ago
1
Bump DeterminateSystems/nix-installer-action from 13 to 14
#3320
dependabot[bot]
closed
2 months ago
2
Bump DeterminateSystems/magic-nix-cache-action from 7 to 8
#3319
dependabot[bot]
closed
2 months ago
3
Bump serde from 1.0.209 to 1.0.210
#3318
dependabot[bot]
closed
2 months ago
1
Bump codspeed-criterion-compat from 2.6.0 to 2.7.1
#3317
dependabot[bot]
closed
2 months ago
2
Bump serde_json from 1.0.127 to 1.0.128
#3316
dependabot[bot]
closed
2 months ago
2
`csv_summary` format not created for multiple queries (`tax metagenome`)
#3315
bluegenes
closed
4 weeks ago
0
is rayon turned on in conda-forge releases?
#3314
ctb
opened
2 months ago
0
consider abundance-weighted `bp_match_at_rank` in `tax`
#3313
bluegenes
opened
2 months ago
0
[pre-commit.ci] pre-commit autoupdate
#3312
pre-commit-ci[bot]
closed
2 months ago
1
MRG: when lingroups are provided, use them for `csv_summary`
#3311
bluegenes
closed
4 weeks ago
5
Bump serde from 1.0.208 to 1.0.209
#3310
dependabot[bot]
closed
2 months ago
2
Bump serde_json from 1.0.125 to 1.0.127
#3309
dependabot[bot]
closed
2 months ago
1
Bump rkyv from 0.7.44 to 0.7.45
#3308
dependabot[bot]
closed
2 months ago
4
MRG: fix formatting from #3306
#3307
ctb
closed
2 months ago
1
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