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Hi SO -- we're continuing to revise our mappings of INSDC to SO terms used in some code at NCBI, and I think it would make sense to add many of the INSDC terms as synonyms in SO. I've reviewed the lis…
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Hi Peter! Great work on the Nature paper. Just curious if the analysis included ncRNA genes? Searching in the article for `RNA` found nothing, which was a bit surprising. Thank you!
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I ran salmon quant -p 6 -i refs/Homo_sapiens_GRCh38_91_quasi_index -l ISF -1
amaer updated
6 years ago
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Hi~
when I ran the following command :
**tombo resquiggle "/home/weir/output/workspace/pass/1/" "/home/weir/genome/Homo_sapiens.GRCh38.dna.primary_assembly.fa" --processes 4
such errors …
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I got following error at almost the final step, ConsensusDriverTask:
`08-01 08:33:56 cat INFO Generating consensus gene set for Nestor_notabilis.
08-01 08:33:57 luigi-interface ERROR [pid 25712…
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Hi,
I'm getting a lot of warnings like this:
> serialiser - orf.py:281 - WARNING - serialize - MainProcess - Invalid entry, reason: STRG.1000.1 not found in the index!
STRG.1000.1 0 3083 ID=STR…
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Need to follow up on handling of notes
On 09/02/2011 19:12, Kim Rutherford wrote:
> On Wednesday 9 February 2011 at 18:20:36, Val Wood wrote:
>
>> There are ~9575 notes on various feature…
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For PomBase annotation extensions (e.g. GO & phenotype), we could use a term for RNA transcribed from long terminal repeats, such as:
name: long_terminal_repeat_transcript
def: An RNA that is transcr…
mah11 updated
6 years ago
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The cli options have become too numerous and are limited to the original exomiser algorithm only. They also use a parallel code path to the analysis API which means implementing new features requiring…
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When a mutation happens in a genome region where two genes overlap, breseq only annotates the mutation for one of them. Would it be possible to make breseq annotate that mutation for all the genes tha…