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ComparativeGenomicsToolkit
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Comparative-Annotation-Toolkit
Apache License 2.0
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CAT should handle internal exon expansions
#320
diekhans
opened
3 months ago
0
transMapPsl doesn't show base mismatches in browser
#319
diekhans
opened
5 months ago
2
Unable to run annotation pipeline. Target h2tg000040l block 10438982-10444550 exceeds sequence length 10441754
#318
smkumaill
opened
7 months ago
0
CAT can't find gene duplications
#317
DhakadPankaj
opened
7 months ago
0
Update nameConversions.py
#316
ph09
closed
8 months ago
0
Concensue bigGenePred column name incorrect
#315
diekhans
opened
8 months ago
1
Update toilInterface.py
#314
ph09
closed
8 months ago
0
Update consensus.py
#313
ph09
closed
9 months ago
0
Update consensus.py
#312
ph09
closed
9 months ago
0
Update filter_transmap.py
#311
ph09
closed
9 months ago
0
Update filter_transmap.py
#310
ph09
closed
9 months ago
0
CAT should not use Ensembl transcript names
#309
diekhans
opened
9 months ago
0
CAT consensus track needs filters
#308
diekhans
opened
9 months ago
0
Got exit code 1 (indicating failure) from job _toil_worker cgp file:/Comparative-Annotation-Toolkit/Darmor_A01_qwe/toil/augustus_cgp/jobStore kind-cgp/instance-cf_rpblx.
#307
jwli-code
opened
10 months ago
1
CAT T2T CHM13 GFF3 have gene_name mismatches between gene and transcript records
#306
diekhans
opened
11 months ago
0
Error at filter_transmap.py
#305
cbcunningham
opened
11 months ago
2
example data erro in TransMapPsl
#304
ld9866
closed
1 year ago
0
TransMapPsl failed
#303
DhakadPankaj
opened
1 year ago
0
Potential enhancements
#302
ph09
opened
1 year ago
0
Improve docker installation and docs
#301
ph09
opened
1 year ago
0
filtering improvement
#300
ph09
closed
1 year ago
0
Update __init__.py
#299
ph09
closed
1 year ago
0
Update README.md
#298
ph09
closed
1 year ago
0
Unable to find CAT dependencies
#297
DhakadPankaj
closed
1 year ago
5
Error when running CAT with --augustus-cgp mode
#296
peter-d-fields
opened
1 year ago
12
CAT fails on cleanup when there are .nfs files
#295
diekhans
opened
1 year ago
1
ANNOTATION in the config file
#294
GeorgeBGM
opened
1 year ago
3
Redo clustering in filtering of transmap step
#293
ph09
closed
1 year ago
0
Capture stderr with Luigi
#292
ph09
opened
1 year ago
0
Revert "Update transcripts.py"
#291
ph09
closed
1 year ago
0
Update transcripts.py
#290
ph09
closed
1 year ago
0
Revert "Update transcripts.py"
#289
ph09
closed
1 year ago
0
Update transcripts.py
#288
ph09
closed
1 year ago
0
Augustus error due to the gene length exceeds maxDNAPieceSize(2000000)
#287
zhqduan
closed
1 year ago
1
SF3B3 gene annotation missing in gff3
#286
diekhans
opened
1 year ago
1
Adjacent "exons" in GTF
#285
diekhans
opened
1 year ago
0
CAT on AWS
#284
larryns
opened
1 year ago
0
query regarding --ref-genome parameter
#283
philge
opened
1 year ago
0
test data crashing on plots
#282
avianalter
closed
1 year ago
4
sqlalchemy & pyfasta dependency issues
#281
avianalter
closed
1 year ago
0
Problems running validate_gff3
#280
avianalter
closed
1 year ago
0
Unable to run docker build (bam2wig.c:18:10: fatal error: sam.h: No such file or directory)
#279
avianalter
closed
1 year ago
3
Custom Augustus training parameters
#278
1Wencai
opened
1 year ago
0
Augustus error in test_data
#277
larryns
closed
1 year ago
1
CAT with an existing Toil cluster?
#276
larryns
closed
1 year ago
4
incorrect trackDb is generate
#275
diekhans
opened
2 years ago
0
test_data error
#274
song984888
opened
2 years ago
0
Singularity
#273
marcovth
opened
2 years ago
0
Inferring Single-copy orthologs
#272
francicco
opened
2 years ago
0
3 way genome alignment
#271
NicMAlexandre
opened
2 years ago
0
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