-
Supplement PomBase S. cerevisiae ortholog predictions with Compara
( same as pombe & human)
I will block the mispredictions later. I'm working through the pombe ones now...
-
Dear Arthur,
I have several questions about the wgd.
1), can I use the wgd for my de novo transcriptome data?
2), I have tried wgd for my denovo transcriptome data. The maximum numbers for d…
-
Page has "Disease" in menu, but no "disease" section on page.
https://www.pombase.org/gene/SPBP4H10.13
-
https://www.pombase.org/results/from/id/58ea50d0-d07d-4933-89d8-fca9adf2f2cf
Add a news item, it's a good increase...
and a new rotation to replace:
Explore PomBase: 25% of pombe proteins have …
-
## Stategies
Benchmark the number of orthologs that can be correctly mapped to humans using the following strategies:
1. Simply making the genes uppercase.
2. `convert_orthologues(method="hom…
-
Hello,
Thank you for developing and sharing the project.
Could you please help me to solve the issue with GFF3 files?
I downloaded the GFF3 files from the NCBI Nucleotide database and took care t…
-
Hi David! Thanks for writing such a great program!
Previously I have been working with a different program, Agalma's `treeprune `function (see paper [here](https://bmcbioinformatics.biomedcentral.…
-
Dear author,
I using BUSCO to assess my annotation and get 1000+ single-copy orthologs, but orthofinder only give 387 sngle-copy protein?
How to explain this difference?
Thanks
Yanpeng Chen
-
we don't know what produced this error?
26 17.243154048919678 1.51 q/s (refinement)
Processed queries:28 total_time:17.262800931930542 rate:1.62 q/s
Functional annotation of refined hits starts …
-
Dear David,
I have installed orthofinder version 2.5.1. It works for orthologs, but not for gene alignments and gene trees and species trees.
I received an error:
```
/tmp/11025382.1.medium.q…