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arzwa
/
wgd
Python package and CLI for whole-genome duplication related analyses. This package is deprecated in favor of https://github.com/heche-psb/wgd.
http://wgd.readthedocs.io/en/latest/
GNU General Public License v3.0
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ksd problem
#92
lindonghuia
opened
1 week ago
0
No codeml results for GF_0000.....
#91
karthickbrlab
opened
2 months ago
0
About input sequences
#90
Tang-pro
opened
3 months ago
0
Error running dmd
#89
hyyuu
opened
5 months ago
1
WARNING:root:No codeml results
#88
abcbot123
closed
6 months ago
1
The align_out folder is empty
#87
ShirelyI
opened
12 months ago
0
Alternative Ks distribution display
#86
romseg
opened
1 year ago
4
WGD run error
#85
majssssa
opened
1 year ago
1
command "wgs ksd" work error
#84
Athena010
opened
1 year ago
1
Singularity error with wgd syn
#83
tylerdodgeball
opened
1 year ago
2
Singularity test failed
#82
ardy20
opened
1 year ago
0
bokeh visualisation error
#81
ardy20
opened
1 year ago
2
Stronger evidence of WGD in one species versus another
#80
andreaswallberg
opened
1 year ago
0
Bump joblib from 0.11 to 1.2.0
#79
dependabot[bot]
opened
1 year ago
0
Dotplots.svg and ks_anchors.tsv files are empty
#78
muthu1722
opened
1 year ago
9
KeyError
#77
FFerraro99
closed
2 years ago
5
How to adjust the abscissa of the Ks plot?
#76
Dementieva521
closed
2 years ago
2
Update README: build local Singularity container
#75
Cecilia-Sensalari
closed
2 years ago
0
Add diamond to Singularity container; update README; minor changes
#74
Cecilia-Sensalari
closed
2 years ago
1
Update Singularity (i-ADHoRe; pandas 1.2) + other fixes
#73
Cecilia-Sensalari
closed
2 years ago
1
Hang up due to codeml and fix
#72
mason-linscott
opened
2 years ago
1
Errors when using kde & mix methods
#71
Ziwei-Liu
closed
2 years ago
0
Visualization
#70
ardy20
closed
2 years ago
1
number of threads
#69
ardy20
closed
2 years ago
1
raise the `max_pairwise` parameter
#68
ardy20
closed
2 years ago
1
wgd ksd output can not generate the tsv file
#67
ljl000
closed
2 years ago
2
Dev
#66
heche-psb
closed
2 years ago
0
wgd syn: multiplicons.txt file issue
#65
chrisjackson-pellicle
opened
2 years ago
0
ksd error about Generating plots and No `Omega` value of some gene pairs
#64
Dawei-Xia
closed
3 years ago
4
wgd ksd error : AttributeError: type object 'object' has no attribute 'dtype'
#63
dongseok123
closed
3 years ago
14
Installation fail while collecting scipy>=1.2
#62
bshrestha0
closed
3 years ago
1
Dev
#61
lizhencmb
opened
3 years ago
2
Dev
#60
heche-psb
closed
2 years ago
0
more readable outfile
#59
heche-psb
closed
3 years ago
0
*ks.svg figure is empty
#58
shiyi-pan
opened
3 years ago
6
PAML installation in Singularity container
#57
Cecilia-Sensalari
closed
2 years ago
2
Is the singularity installation up to date?
#56
smallfishcui
opened
3 years ago
3
wgd ksd python error
#55
zxclovezby
closed
3 years ago
13
Merge pull request #1 from arzwa/dev
#54
heche-psb
closed
3 years ago
0
handle singleton families
#53
arzwa
closed
3 years ago
0
Installation stuck at pandas wheel
#52
Cecilia-Sensalari
closed
2 years ago
1
compute a Ks distribution error
#51
bigboom1
opened
3 years ago
2
Extract CDS for WGD events
#50
joehagmann
closed
3 years ago
2
error in plot generation in wgd ksd
#49
joehagmann
closed
3 years ago
2
updated lab website
#48
heche-psb
closed
3 years ago
0
Can I use wgd for de novo transcriptomes
#47
lychen83
closed
2 years ago
7
result figures are empty
#46
shiyi-pan
opened
3 years ago
6
mcl error about Not all gene pairs present
#45
shiyi-pan
closed
2 years ago
3
errors in ksd step with the example dataset, newick error
#44
gainett
closed
2 years ago
6
enconding error
#43
shiyi-pan
closed
3 years ago
7
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