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I'm trying to test ray on a university cluster with the code below
import ray
ray.init(address="auto")
import time
@ray.remote
def f():
time.sleep(0.01)
return ray.services.get_nod…
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Hi,
I am trying to run differential expression within the clusters for two groups. I have run the single cells through seurat reference based mapping (Azimut) for my small cohort . Below is the c…
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Make sure ert3 still runs in Azure using the PBS cluster.
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I noticed that snakePipes is very powerful to do mics analyses including ChIP-seq, RNA-seq, Bisulfite-seq, ATAC-seq, Hi-C and seRNA-seq. Abosutely, IT is a badly REQUIRED program in big biodata era.
…
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Failed to execute cluster-init script '/mnt/cluster-init/pbs/default/scripts/1-joindomain.sh' in project 'pbs' (return code: 1)
Software Configuration
Edit and re-upload the script to correct the er…
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## Version of Singularity:
2.4.1
### Expected behavior
/tmp/.singularity-runtime.* should be cleaned up when exiting container. This only occurs for a
**specific** docker container so I'm n…
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Dear all,
I'm trying to use this profile with `snakemake`, but was wondering if it is possible to add extra commands to be run after the `snakemake` job. I've tried changing `pbs-jobscript.sh` to:
…
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Je dost možný, že se změnily požadavky na GPU jobs a je nyní nově potřeba udávat GPU frontu. Tj. job definovaný tímto qsub skriptem:
```
#PBS -N GPU-hello-world
#PBS -q gpu
#PBS -l walltime=6:0:…
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I am not sure if our scheduler classes for "Torque" are named correctly. I wonder if PBS is a more appropriate name, since our Torque scheduler works decently well with other PBS (qsub) systems that a…
bdice updated
3 years ago
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**Describe the bug**
I am searching my spectra against target and decoy peptide files (`orthoalltime.target.fa` and `orthoalltime.decoy.fa`) separately using the following command:
```
for peptides…