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maxplanck-ie
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snakepipes
Customizable workflows based on snakemake and python for the analysis of NGS data
http://snakepipes.readthedocs.io
MIT License
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Real-data pytests
#1017
WardDeb
closed
1 day ago
1
snakePipes createEnvs fails
#1016
musikutiv
opened
3 weeks ago
1
Extentions2 ks
#1015
katsikora
closed
1 month ago
0
allow user to specify mincount for filtering windows for DB with CSAW
#1014
katsikora
opened
2 months ago
0
[Request] looping inputs for multiple ChIP-seq comparisons
#1013
sunta3iouxos
opened
2 months ago
1
[Question] where to find the exact command issued?
#1012
sunta3iouxos
closed
2 months ago
2
plotFinger fails due to insaficient wall time
#1011
sunta3iouxos
opened
2 months ago
6
mRNA-seq: sambamba markdup fails because "too many open files"
#1010
caballero
opened
2 months ago
0
Error in mRNA-seq allelic-mapping when using custom genome
#1009
caballero
opened
2 months ago
0
Extentions ks
#1008
katsikora
closed
2 months ago
0
update the snakePipes installed from the github
#1007
sunta3iouxos
opened
2 months ago
0
error in ChIP-seq
#1006
sunta3iouxos
closed
2 months ago
2
Develop
#1005
katsikora
closed
2 months ago
0
bumped versions and docs
#1004
katsikora
closed
2 months ago
0
Allelic frombam
#1003
katsikora
closed
2 months ago
0
Chipseq ks: SEACR fixes
#1002
katsikora
closed
2 months ago
0
fix SEACR with control
#1001
katsikora
closed
2 months ago
0
add allelic-counting mode to mRNA seq
#1000
katsikora
closed
2 months ago
0
Chipseq ks
#999
katsikora
closed
3 months ago
0
add peak qc for SEACR as for MACS2
#998
katsikora
closed
2 months ago
1
Genrich -e option addition
#997
sunta3iouxos
closed
2 months ago
0
fix nearest Gene annotation on CSAW_DBR
#996
katsikora
closed
2 months ago
0
Fix988 mrnaseq
#995
katsikora
closed
3 months ago
0
allow for custom bed to be used as input to CSAW for DB
#994
katsikora
closed
2 months ago
0
conda and "strict channel priorities"
#993
sunta3iouxos
closed
3 months ago
2
snakePipes envInfo: AttributeError: 'NoneType' object has no attribute 'encode'
#992
sunta3iouxos
closed
3 months ago
4
error in createIndices: module 'pulp' has no attribute 'list_solvers'. Did you mean: 'listSolvers'?
#991
sunta3iouxos
closed
3 months ago
3
DNA-mapping allelic changes
#990
WardDeb
closed
3 months ago
1
DNA-mapping allelic mode - NMaskindex / SNPfile combination
#989
WardDeb
closed
3 months ago
0
add support for custom model formula to mRNAseq and other workflows
#988
katsikora
opened
4 months ago
2
Include the news for 2.8.1
#987
WardDeb
closed
4 months ago
0
include news for 281
#986
WardDeb
closed
4 months ago
0
recipe version, condaenvdir default version
#985
WardDeb
closed
4 months ago
0
update version in conda recipe, include a more sensible default conda…
#984
WardDeb
closed
4 months ago
0
mamba vs conda
#983
WardDeb
opened
4 months ago
1
dunder 2.8.1
#982
WardDeb
closed
4 months ago
0
Vboost
#981
WardDeb
closed
4 months ago
0
bugfix 2.8.0
#980
WardDeb
closed
4 months ago
0
Update docs dependencies + extras
#979
adRn-s
closed
2 months ago
0
bugfix 2.8.0
#978
WardDeb
closed
4 months ago
3
Develop
#977
katsikora
closed
5 months ago
4
fix thefuzz dep
#976
katsikora
closed
5 months ago
0
move from setup.py to pytoml
#975
katsikora
opened
5 months ago
0
test boa for building snakePipes
#974
katsikora
opened
5 months ago
0
fix `--predictChIPDict` for cutNX
#973
katsikora
opened
5 months ago
0
Update News.rst
#972
katsikora
closed
5 months ago
0
Develop
#971
katsikora
closed
5 months ago
0
Version bump
#970
katsikora
closed
5 months ago
0
TO-DO before upcoming release
#969
katsikora
opened
5 months ago
0
Documentation and News
#968
katsikora
closed
5 months ago
0
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