issues
search
maxplanck-ie
/
snakepipes
Customizable workflows based on snakemake and python for the analysis of NGS data
http://snakepipes.readthedocs.io
389
stars
88
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
pairtools - multiqc enhancements
#1081
WardDeb
opened
2 weeks ago
0
bowtie2 build fix
#1080
katsikora
opened
2 weeks ago
0
force compression of multiqc_data
#1079
thomasmanke
opened
3 weeks ago
0
three-prime-seq replace "shell" with "script" directive
#1078
katsikora
opened
3 weeks ago
0
proper envs - conda versions
#1077
WardDeb
opened
3 weeks ago
0
salmonIndex seq name from genes_bed2fasta
#1076
hanrong498
opened
1 month ago
0
validateFQ
#1075
hanrong498
opened
1 month ago
1
bump mqc in sharedenv to .25
#1074
WardDeb
closed
1 month ago
0
3.1.0
#1073
WardDeb
closed
1 month ago
0
Create indices orgyamls
#1072
WardDeb
closed
1 month ago
0
createIndices yaml output
#1071
WardDeb
closed
1 month ago
1
rule histoneHMM_out_gz throws an error at workflow rerun in the same output folder
#1070
katsikora
opened
1 month ago
0
snakepipes - pypi
#1069
WardDeb
opened
1 month ago
0
makePairs workflow cleanup
#1068
WardDeb
opened
1 month ago
0
Pairtools merge
#1067
WardDeb
closed
1 month ago
1
Clean up global args
#1066
WardDeb
opened
1 month ago
0
resources/--j
#1065
hanrong498
closed
1 month ago
2
capturing sambamba/markdup log for MultiQC report
#1064
caballero
opened
2 months ago
0
scRNA - combine_loom
#1063
WardDeb
opened
2 months ago
0
version 3.0.0 fails to create environments (stops at the RNAseq)
#1062
sunta3iouxos
opened
2 months ago
5
default conda env in 3.0.0
#1061
sunta3iouxos
opened
2 months ago
4
no snakePipes v3.0.0 with "conda create -n snakePipes -c mpi-ie -c conda-forge -c bioconda snakePipes"
#1060
sunta3iouxos
closed
2 months ago
2
drop log as omitted by profile
#1059
WardDeb
closed
2 months ago
0
add `--keep-going` back to snakemake command
#1058
katsikora
opened
2 months ago
0
bowtie --cutntag -X 700, ATAC-seq, maxfragment size
#1057
sunta3iouxos
opened
2 months ago
0
shift read correction for ATAC/Cut&Tag
#1056
sunta3iouxos
opened
2 months ago
0
docs
#1055
katsikora
closed
2 months ago
0
Fix 1049 and 1009
#1054
katsikora
closed
2 months ago
0
feature request? pepatac
#1053
sunta3iouxos
opened
2 months ago
2
fix 1025
#1052
katsikora
closed
2 months ago
0
snakePipes 3.0.0 logging
#1051
katsikora
opened
2 months ago
5
error in createEnvs
#1050
Leif78
closed
2 months ago
8
conda-env create is using /tmp
#1049
katsikora
opened
2 months ago
7
Add ChIPQC
#1048
katsikora
opened
2 months ago
1
fix 1023
#1047
katsikora
closed
2 months ago
0
Fix CI test
#1046
katsikora
closed
2 months ago
0
error while running the DNA-mapping
#1045
sunta3iouxos
opened
3 months ago
3
dependency issues wgbs
#1044
sunta3iouxos
opened
3 months ago
3
Dev ks
#1043
katsikora
closed
3 months ago
0
Dev ks
#1042
katsikora
closed
3 months ago
1
3.0.0
#1041
WardDeb
closed
3 months ago
0
3.0.0 updates
#1040
WardDeb
closed
3 months ago
0
Pairtools finaltweaks
#1039
WardDeb
closed
3 months ago
0
Pairtools ci
#1038
WardDeb
closed
3 months ago
0
Fixes for allelic DNA-mapping
#1037
katsikora
closed
3 months ago
0
Conda build test on gha
#1036
katsikora
closed
3 months ago
0
Pairtools manke
#1035
thomasmanke
closed
3 months ago
1
Pairtools manke
#1034
thomasmanke
closed
3 months ago
1
conda build working locally
#1033
katsikora
closed
3 months ago
0
graphviz - DAG plotting
#1032
WardDeb
closed
3 months ago
0
Next