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Hello,
I performed below command. Why counts of rows of "fpkm_matrix" inconsistent with that of "counts"?
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library(countToFPKM)
counts
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~I'm not sure if there's a bug here, but it would be good to capture this information in a transcript test (or confirm that we already have one).~ Wait, read on, I think there's definitely at least on…
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It should be possible to nest signature declarations inside structures and specifications inside signatures. The [OCaml Map](https://caml.inria.fr/pub/docs/manual-ocaml/libref/Map.html) module is just…
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Isolator looks like an interesting new approach, but most of my experiments cannot be described simply as disjoint groups of samples. Almost always, there are one or more other factors that I want to …
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In the paper [De-biasing "bias" measurements](https://arxiv.org/abs/2205.05770), the authors introduce a "corrected" estimator for the between-group variance. The authors state that commonly used…
LeJit updated
4 months ago
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Hi after running ORFquant i got all the expected output files ex. gtf file, fasta file, final results file and tmp file but pdf/html reports not produced.
When i tried producing using the ORFquant …
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RNA-Skim: a rapid method for RNA-Seq quantification at transcript level
http://bioinformatics.oxfordjournals.org/content/30/12/i283.full.pdf+html
Li HD, Menon R, Omenn GS, Guan Y. (2014) The emerging…
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```scala
object Test {
trait Foo
trait TC[A]
object TC {
implicit def tc1[F
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### Description of feature
Instead of attached on specific statistical test to a workflow, let them run on any the generalized stand_pep/stand_prot files, then providing an updated version of these f…
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Just parking a vague idea
In several cases we want to estimate additional statistics to help in the interpretation, these are like parameters that don't show up in the null model
example
- ATE:…