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Hi,
I'm runnning SpliceSeq locally with an aim to process my own RNA-seq data. I have set up a comparison between two samples just to check its working but I keep getting 'AlignReads ERROR'.
I …
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https://mp.weixin.qq.com/s/3tmjRv9290VR2akkI3GBOQ
ixxmu updated
1 month ago
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I recently started my lab at UB and found that an essential software called depptools is missing from the module collection so we cannot analyze our data. This is a quote commonly used one, so could …
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### Description of the bug
[issue in downloading](docker: failed to register layer: rename /docker/image/overlay2/layerdb/tmp/write-set-2818107168 /docker/image/overlay2/layerdb/sha256/968f331861f0…
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### Description of the bug
I apply the nfcore diffabundance pipeline on the output of the nfcore rnaseq pipeline on bulk RNA-seq data. The data contains >2 conditions with several replicates per co…
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Hi,
I am working on the analysis of a time-course RNA-seq in wheat and I would love to apply your package to identify expression patterns over time.
While trying to run TrendCatcher, the job i…
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Hi,
Thanks in advance for this github project.
The sports1.1 is really nice for small-RNA-Seq data analysis, especially its updated version from 1.0 to 1.1.
I ran the pipeline successfully an…
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Hi,
I'm looking at the and product of CAT, run only using TransMap and excluding the indel classification `r.extend(find_indels(tx, psl, aln_mode))`.
I'm now trying to build a table of orthologs…
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Change text definition for intratelencepalic-projecting glutamatergic neurons in CL. Mention transcriptomic distinction, include morphological and electrophysiological definition where possible, menti…
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**Describe the bug**
Running test.sh fails at certain tests because oxpy.core.OxDNAError: Mandatory key `seq_dep_file_RNA' not found. Log below :)
All other tests from the documentation pass and eve…