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Hello,
I have a question: according to Oxford nanopore their last cells produce very accurate reads. Does "map-ont" still work as the best setting to map those reads? I am asking because the manual…
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Hi! I really appreciate for developing this powerful tool.
I met a puzzling event - there were no any MT-gene detected in some of my scTE csv files, which could be found in starsolo matrix.
Why did…
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I recently noticed quite different results when running my code between EC2s. The code and objects are exactly the same, confirmed with MD5 checksums on all input object, and so as best I can tell the…
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Hi,
Thank you for providing your tools. But i'm experiencing some issues.
I'm using it, on published data : GSE84901
I followed the tutorial on your git : https://rpubs.com/anastasiiaNG/GAMcl…
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I'm trying to follow the vignette here https://satijalab.org/seurat/articles/integration_introduction. However, I got the following error:
```
warning: No layers found matching search pattern provid…
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Hi there,
First at all, I must say this is the only program that got to annotate many of the normal viral marker genes in a very weird virus we are working on.
Second, is there a way to keep the…
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```r
SeuratData::InstallData("pbmc3k")
library(Seurat)
library(SeuratData)
library(ggplot2)
library(patchwork)
pbmc3k.final
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### Report
Hi there,
I am interesred in trying out Cellcharter on our cluster.
Following the installation instructions I always get the following error:
```
An NVIDIA GPU may be present on th…
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Creating this issue to explicitly capture and discuss the notion of minimal data elements in gene fusions, and how these inform the representation of those variants.
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Hi Seurat Team,
I followed the tutorial of Integrating stimulated vs. control PBMC datasets to learn cell-type specific responses.
```
immune.combined