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CSOgroup
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cellcharter
A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.
https://cellcharter.readthedocs.io/en/latest/
BSD 3-Clause "New" or "Revised" License
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Is there a way we can add in our own reference as training data
#46
Sudheshna30
opened
2 days ago
0
Fix issue with diff_nhood_enrichment when more than two conditions are present
#45
grst
opened
3 days ago
0
Raise ValueError on sparse array
#44
marcovarrone
closed
3 weeks ago
0
Fix boundaries for NaN values
#43
marcovarrone
closed
1 month ago
0
Fix get_cmap import from matplotlib
#42
marcovarrone
closed
1 month ago
0
Add tutorial for 10X Visium dataset?
#41
EddieLv
opened
1 month ago
1
Update template to v0.4.0
#40
scverse-bot
closed
1 month ago
0
error in diff_nhood_enrichment
#39
Bo-UT
closed
3 weeks ago
1
cc.tl.ClusterAutoK always fails
#38
Zjianglin
opened
1 month ago
6
Fix plot_boundaries
#37
marcovarrone
closed
1 month ago
1
Update docs
#36
marcovarrone
closed
1 month ago
1
cc.pl.plot_boundaries doesn't work
#35
Feanor007
closed
1 month ago
2
Some functions are missing from API docs
#34
grst
closed
1 month ago
3
Incompatibility with latest spatialdata-plot
#33
grst
closed
1 month ago
2
failed to run cc.tl.ClusterAutoK and cc.tl.Cluster
#32
zhengrongbin
closed
1 month ago
4
Set pyro-ppl version dependency
#31
marcovarrone
closed
4 months ago
1
Failed running the ClusterAutoK.fit in Cosmx
#30
TengyuZz
closed
3 weeks ago
6
Installation of cellcharter
#29
alirezaah98
closed
4 months ago
1
Update template to v0.3.1
#28
scverse-bot
closed
4 months ago
1
Order diff nhood
#27
marcovarrone
closed
4 months ago
1
Using cc.gr.nhood_enrichment to compare spatial clusters localisation to histological zones and cc.gr.diff_nhood_enrichment with more than two conditions
#26
antonncheeseman
opened
4 months ago
2
23 installation of cellcharter report import error from spatialdata coredata extent
#25
marcovarrone
closed
5 months ago
1
cannot import name 'get_extent' from 'spatialdata._core.data_extent
#24
SBDixit
closed
5 months ago
1
Installation of cellcharter report import error from `spatialdata._core.data_extent`
#23
Jieran-S
closed
5 months ago
2
bugs in cc.gr.diff_nhood_enrichment
#22
SGIlabes
closed
4 months ago
2
Confirmation of Utilizing Multiple GPUs and Re-training Upon Addition of Data
#21
ayumatsubo
closed
5 months ago
4
Update template to v0.3.0
#20
scverse-bot
closed
5 months ago
0
Installation fails with version 0.2.0
#19
shashwatsahay
closed
4 months ago
10
Update template to v0.2.22
#18
scverse-bot
closed
10 months ago
1
Spatial cluster shapes
#17
marcovarrone
closed
10 months ago
1
Update template to v0.2.21
#16
scverse-bot
closed
10 months ago
0
Update template to v0.2.12
#15
scverse-bot
closed
10 months ago
0
Documentation/feature request for cluster shapes
#14
dpcook
closed
10 months ago
1
Couldn't import package
#13
Feanor007
closed
1 year ago
3
Possible typo in the manuscript?
#12
Feanor007
closed
1 year ago
1
Update template to v0.2.11
#11
scverse-bot
closed
1 year ago
0
Automated template update from cookiecutter-scverse
#10
github-actions[bot]
closed
1 year ago
0
Automated template update from cookiecutter-scverse
#9
github-actions[bot]
closed
1 year ago
1
Fix codecov CI and update template
#8
grst
closed
1 year ago
0
Automated template update from cookiecutter-scverse
#7
github-actions[bot]
closed
1 year ago
0
Limit required Python to < 3.11
#6
marcovarrone
closed
1 year ago
0
Nothing in PyPI repo?
#5
qu4drupole
closed
1 year ago
2
How to train my own dataset?
#4
EddieLv
closed
1 year ago
5
Automated template update from cookiecutter-scverse
#3
github-actions[bot]
closed
1 year ago
0
Automated template update from cookiecutter-scverse
#2
github-actions[bot]
closed
1 year ago
1
[pre-commit.ci] pre-commit autoupdate
#1
pre-commit-ci[bot]
closed
1 year ago
0