-
### Description of the bug
We need to remove / refactor this call because it raises an error when accessing buckets across regions with AWS
https://github.com/nf-core/rnaseq/blob/e049f51f0214b2aef76…
-
## Request for unambiguous description of the most important output files
First, apologies and feel free to close this issue if this has been addressed in `nf-core/rnaseq/3.4`.
When running…
-
### Description of the bug
I am trying to run nf-core with RSEM to quantify gene expression.
However, the process RSEM calculate expression fails and exits with error code 255.
Upon inspection of…
-
### Description of the bug
-[nf-core/rnaseq] Pipeline completed with errors-
Error executing process > 'NFCORE_RNASEQ:RNASEQ:PREPARE_GENOME:GTF_GENE_FILTER (GRCh38.primary_assembly.genome.fa)'
…
-
Hi,
we have been getting an error when running the aberrant splicing module at the Counting_01_1_countRNA_splitReads_samplewise step. At first I thought that it was an out of memory problem, so I g…
-
### Description of the bug
Hi, I get get the following error message when running nf-core/rnaseq test. And comments/suggestions?
![Error](https://user-images.githubusercontent.com/10214729/1667525…
-
### Description of the bug
Hi,
I have been running my nfcore-rnaseq pipeline using the following command for a long time now..
/SIH/tools_and_resources/installtions/nextflow_local/21.10.6.5660/…
-
# nf-core/rnaseq bug report
## Description of the bug
`nf-core/rnaseq -profile docker,test` fails with permission errors when untarring the salmon index. Temp fix by @drpatelh in 0b4b140.
Su…
-
Hi Drop Team,
Apologies for raising two issues in one day! I'm running DROP with my own samples successfully, but when I tried to add external counts, it's failing pretty much instantly with the fo…
-
Related to #413.
* **Name of tool:**
* CellRanger COUNT (from 10X Genomics)
* **Tool description:**
* "The Chromium Single Cell Gene Expression Solution provides high-throughput, single …