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Steps:
1. Search repo folder /articles for "{% tab R %}"
2. Find 58 examples
3. Work with someone who knows R to fix each
Sample issue is #283.
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I propose starting with CTRP/CCLE and the Sanger Data. The former is already in Synapse:
https://www.synapse.org/#!Synapse:syn5889324/wiki/396585
I haven't downloaded the Sanger data.
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Thinking this might be browser specific, I tried safari also:
![image](https://user-images.githubusercontent.com/2480712/33861031-73f0f8e0-de90-11e7-9595-dbdce41a756c.png)
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We need to agree upon a fast network format to parse.
There are numerous formats listed here:
http://www.home.ndexbio.org/network-formats/
The general default seems to be binary sif, which is what…
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http://docs.synapse.org/r/synDownloadTableColumns.html
moved from
https://sagebionetworks.jira.com/browse/SYNR-1050
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To date there is no way to distinguish scRNA-Seq data from RNA-Seq data since there is no real library prep platform to distinguish them, nor is there a distinct assay or data type. Should we add one?…
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So I began to use the json exporter this week to create empty file views (see https://github.com/Sage-Bionetworks/synAnnotationUtils/pull/63/files ).
The problem is that when I take a json and expo…
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This will encompass keys/terms to describe tools used in and shared by a project such that they can be easily viewed and queried similar to other files.
Some potential information to consider:
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I've written some code to make working with the json files here a bit easier, but I'm not sure if this is the best way to go about it. This might be a better fit for annotation utils.
Essentially I…