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The diffusion map is a dimensionality reduction technique that uses a transitional probability as its "distance" measure. It is noise-resistant and non-linear. Moreover, the algorithm itself is fast a…
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### Project short name:
Yang-Human-10x3pv3 (Zhang_Yang_2021 in Spreadsheet)
### Primary Wrangler:
### Secondary Wrangler:
### Link to Ingest
https://contribute.data.humancellatlas.org/projects/…
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Dear Velocyto team,
I have a question about running velocyto on eight 10x samples. Since 10X pipeline gives bam file for each sample, I can run velocyto on each bam file one by one and generate eig…
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I think that `computeActivity` could be made faster with better book-keeping. For reference:
```
void Connections::computeActivity(
vector &numActiveConnectedSynapsesForSegment,
vector &n…
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Dear Dr. Li,
Firstly, I would like to express my gratitude for creating such excellent tools.
I have utilized TRUST4 to analyze my different spatial TCR data set (TRA and TRB are enriched separ…
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The Rank2D visualizer is a feature analysis visualizer that ranks pairwise joint plots of feature columns together (similar to a SPLOM) using a metric in the space [-1, 1] or [0, 1]. The rankings are …
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### Current Behavior
When merging the landcover and enabling the option "clean artefacts" there are still fake bridges present in the merged land cover.
### Expected Behavior
Clean artefacts rem…
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### Describe the bug
The line "#r "nuget: Microsoft.Data.Analysis" causes error that DataFrameKernelExtension failed to load, saying that the method "Void Microsoft.DotNet.Interactive.Commands.Submit…
R0315 updated
10 months ago
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Hi there,
Thanks so much for creating this package. I'm in the processing for trying it for one of my samples.
I have bulk WGS and 10x scATACseq (also paired scRNAseq; outputs generated by cellrange…
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Hello,
I am trying to replicate the results from your paper for the 96 single-cell part as I would like to get acquainted with the tool and see all results.
I am trying to get all the needed info…