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Hi,
I would like to report a problem I encountered recently with one of my workflows when using individual conda environments for different rules which should be installed inside a globally defin…
reslp updated
8 months ago
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Hi,
I am trying to run braker on a de novo masked vertebrate genome and I am encountering the following error message:
`ERROR in file ~/miniconda3/envs/braker/bin/braker.pl at line 5323`
`Faile…
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Hello,
Only Singularity is installed on our research cluster, not Docker. I have run the Docker container through singularity. When running analysis, I get the following error at the end:
,,,
h…
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I get an import error at line [client_abstract_benchmark.py:335](https://github.com/automl/HPOBench/blob/47bf141f79e6bdfb26d1f1218b5d5aac09d7d2ce/hpobench/container/client_abstract_benchmark.py#L335) …
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Hi
Does anyone know how to use the docker image of `julia_adfem` under the `singularity` environment?
I have pulled the image. By running `"singularity exec ./julia_adfem_v1.sif julia"`, I can get…
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Running v0.18.1 with singularity gave me an error:
singularity run --cleanenv -B /pool/study:/license -B ${TMPDIR}:/tmp -B {INPUT}:/input -B {OUTPUT}:/output /pool/container/qsiprep_v0.18.1.simg -…
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I implemented the latest version of TensorFlow @ tensorflow-notebook:latest.
Of course, my computer was equipped with an NVIDIA GPU(Geforce RTX 2080SP).
```python
import tensorflow as tf
print…
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Gradcorrect seems to use fslmaths to save the output file as dataype = short (which is signed int16?)? Raw data from the CFMM scanner comes in uint16. Any values >32000 get converted to negative with …
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Ideally, a WES server will implement executing all workflows that e.g. can be retrieved with OCI containers (for its platform, amd64, and convertible into the required container format, e.g. Singulari…
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API driven export of workflow from HIVE using BCO portal