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if we don't have the true cell label. how can we calculate nmi . if not ,how we evaluate the clustering result.looking forward to your reply! thanks!
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### Ask away!
I installed wf-transcriptomes some weeks ago using the following command on cluster:
nextflow run epi2me-labs/wf-transcriptomes -–help
However, it doesn't work with my own data g…
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http://rseqc.sourceforge.net/
http://kazumaxneo.hatenablog.com/entry/2018/02/27/235531
multiqcでも表示できそう
https://multiqc.info/docs/
Supported scripts:
- bam_stat
- gene_body_coverage
- infer_…
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Dear community,
I have 4 lane files for each sample. I want to run Alevin on these samples. Alevin runs without any error, but the mapping rate is too low (about 5%). I tried different k-mers, diff…
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Hi, @bmill3r
Sorry to trouble you. I'm new to analyzing spatial transcriptomes. I am trying to do it with your tools to deconvolve. I have two questions.First, I see the tutorial in “https://github…
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Hi Arkadiy,
Thank you for all that you do! I am noticing that FeGenie renumbers/names contigs within individual MAGs' depth files. For those of us who cross-reference output from different tools, li…
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Hi,
I run the bioinformatics core at La Jolla Institute for Immunology (lji.org), and one of our researchers is interested in running your tool. I've had a quick look through the repo and was unab…
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> Serratus looks very exciting. I haven't seen it before so thanks for sharing. The interface is intuitive and the graphics are quite nice. My only suggestion would be to possibly include some SRA met…
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gdcParseMetadata error
```R
> metaMatrix.RNA
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Hi,
Thanks for publishing pufferfish! I was interested in trying it for genome alignment, but when I tried to index GRCh38 it printed out a lot of warnings as if it was interpreting it as a transcr…