JEFworks-Lab STdeconvolve issues

JEFworks-Lab / STdeconvolve

Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data

http://jef.works/STdeconvolve/

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issues

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Fixing Restrict Corpus

#65 alyosama closed 2 weeks ago
2
fitLDA plot question

#64 jyoo19 closed 2 weeks ago
2
Revert "Fixing F-distribution degree of freedom bug"

#63 JEFworks closed 2 weeks ago
0
Fixing F-distribution degree of freedom bug

#62 alyosama closed 2 weeks ago
4
Error in restrictCorpus() in default settings.

#61 lelandwilliams opened 1 month ago
0
Question Regarding the Use of Diebold-Mariano Test

#60 xieaq opened 3 months ago
0
dependency 'liger' is not available

#59 LX2006 closed 4 months ago
2
Error with annotateCellTypesGSEA function

#58 odunola26 opened 5 months ago
4
How to add cell types to deconvoluted 10x Visium data?

#57 532at opened 5 months ago
3
'x' must be an array of at least two dimensions error

#56 wangjiawen2013 opened 5 months ago
1
Question about STdeconvolve: MOB layer transcriptional profiles

#55 ZZYMaxwell opened 7 months ago
1
Inconsistencies with Louvain Clustering

#54 rln0005 closed 7 months ago
3
InferCNV from STdeconvolve data

#53 rstagnit opened 7 months ago
2
Error when using annotateCellTypesGSEA

#52 d-henness opened 8 months ago
3
How do i view all log2fc gene.

#51 M454yuki closed 7 months ago
2
Visium 'se' object creation error

#50 Umaarasu opened 9 months ago
3
Adding deconvolved cell types to Seurat `meta.data`

#49 shaniAmare closed 7 months ago
1
mOB dataset

#48 caucheteux closed 7 months ago
2
ST deconvolve analyses with replicates

#47 dcare91 closed 7 months ago
3
Analyze specific area of the slide

#46 chfloudas closed 10 months ago
4
How to know what are topics when plotting pie charts on that pixel?

#45 Shikari666 closed 10 months ago
1
Clustering a specific cell type

#44 Dillon214 closed 7 months ago
1
Match annotation and deconvolved cell types

#43 xieaq opened 1 year ago
5
Cell type specific counts, and testing between conditions

#42 Dillon214 closed 1 year ago
1
scatter plot circles instead of sctter pie circles

#41 cathalgking closed 1 year ago
1
choosing the optimal number of "Ks"

#40 cathalgking closed 1 year ago
6
Visium image is flipped - mirror symmetry

#39 cathalgking closed 1 year ago
15
Superimpose scatterpies on an H&E image

#38 peleg555 closed 1 year ago
1
Integrated Object Visualization

#37 inhyeoklee closed 1 year ago
1
Cell-type Annotation with STdeconvolve outputs

#36 inhyeoklee closed 1 year ago
14
Giotto Object to STdeconvolve, and general questions about workflow, choosing K, cell type annotation, etc

#35 chrkuo opened 1 year ago
12
Cell volumes for MPOA reproduction

#34 paulmorio opened 1 year ago
5
From STdeconvolve/docs/visium_10x.md. Error when call function CleanCounts()

#33 sondvo closed 1 year ago
2
How to work on Slide-seq adata object?

#32 ShaowenJ closed 1 year ago
5
How to make annote on my own data?

#31 Knight1995 closed 1 year ago
1
merge from devel: added vignette on combining datasets and some small aesthetics to plotting

#30 bmill3r closed 1 year ago
0
Could not find function "simulateBregmaSpots"

#29 LYxiaotai opened 1 year ago
2
Visualization-deconvolved cell types

#28 Pedramto89 closed 1 year ago
5
deconvolved cell-types to seurat object

#27 AteeqMKhaliq closed 2 years ago
5
About loading 10X data

#26 Pedramto89 closed 2 years ago
6
Using stdeconvolve with normalized / integrated data

#25 Acaro12 opened 2 years ago
6
Error in asMethod(object) : Cholmod error 'problem too large' at file

#24 AteeqMKhaliq closed 2 years ago
9
Combination of STdeconvolve with BayesSpace

#23 Acaro12 closed 2 years ago
2
Question related to 10x Visium STdeconvolve

#22 JoyOtten closed 2 years ago
1
integrated Object

#21 AteeqMKhaliq closed 2 years ago
11
STdeconvolve on multiple sections at the same time

#20 JoyOtten closed 2 years ago
1
How to annotate cells in the STdeconvolve

#19 ysq1770368148 opened 2 years ago
6
The order of MPOB slices

#18 leihouyeung closed 2 years ago
1
The differentially expressed genes for each deconvolved cell-type

#17 ShawnXzz closed 2 years ago
2
STdeconvolve

#16 cloony2020 closed 2 years ago
0