-
Perhaps a model were we just say
MAPK cascade part_of "response to osmolarity stress"
MAPK cascade part_of "response to oxidative stress"
would work better. The current situation already has lots…
ukemi updated
6 years ago
-
### Background
GPML (Graphical Pathway Markup Language) is the XML format used by WikiPathways and PathVisio to store graphical and semantic pathway data. [WikiPathways](http://www.wikipathways.org…
-
Before release, let's review the performance of the layouts and hide/remove by default those that fail to meet some basic sanity test.
- pathway participant numbers
- data providers
- other const…
-
Not sure what the best mechanism to accomplish the license change is, but just creating the issue so we can make good on the promise that was made at Biocuration 2017. ;)
For reference, here are h…
-
Breaking case: [Search for 'apoptosis'](http://mj3cheun.github.io/pathways-search.html#/search?gt=3<=200&q=apoptosis&type=Pathway) shows WikiPathways among results.
[Filtering for 'Wikipathways']…
-
Attempting to run the [updatePathway test](https://github.com/wikipathways/wikipathways-api-client-js/blob/master/test/manual-tests/update-pathway.js) produces this error:
```
WS FAULT exception: [Se…
-
Danyel Jennen, toxicogenomics, has a student working on liver steatosis. I mailed him for info on this, and whether we could work together as he asked last meeting whether we have a liver steatosis pa…
-
The VoID headers files must be files in that folder too (and for convenience handy to have in the zip file too).
Tina, the workflow (script, right) needs to be updated to also put the two VoID head…
egonw updated
7 years ago
-
Add better instructions for how to add ontology tags to new pathways
-
Many nanopubs have identifiers in the identifier.org domain, for which we have no authority to mint new URIs. For example: http://identifiers.org/tair.locus/AT3G21720_nanopub.RA9T4XOYC3lwM5Qqz-Poyj5JP…
tkuhn updated
7 years ago