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nrnb
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GoogleSummerOfCode
Main documentation site for NRNB GSoC project ideas and resources
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Integration of complexity score functions into the iGEM DNA kit distribution workflow
#242
Gonza10V
closed
2 months ago
8
Getting the complexity score from SBOL files to streamline DNA synthesis using standards
#241
Gonza10V
opened
3 months ago
4
Integration of GRN inference algorithms using single cell multi-omics data to BEELINE
#240
yiqisu
closed
2 months ago
3
test
#239
blessyantony9
closed
3 months ago
0
Using Foundation Models to Infer Gene Regulatory Networks
#238
n-tasnina
closed
2 months ago
20
INTEGRATE4Galaxy
#237
marcoxa
closed
2 months ago
6
ASCETIC API and Shiny App
#236
marcoxa
closed
2 months ago
4
Large Language Model-based creation of knowledge graph from a publication
#235
dexterpratt
closed
2 months ago
14
Implement AWS DevOps Pipeline for Image Deployment for Graphspace
#234
maheshkasabe
closed
2 months ago
6
Cytoscape Automated Testing Suite for Biomedical Visualization
#233
jingjingbic
opened
5 months ago
7
Generate Automated Layouts for Pathways with Large-Language Model (e.g., ChatGPT) Planning
#232
cannin
opened
5 months ago
3
Machine Learning support for constructing maps from scratch in Newt
#231
ugurdogrusoz
closed
2 months ago
7
Validation service for SBGN PD maps
#230
ugurdogrusoz
opened
5 months ago
1
Large Network Renderer
#229
jingjingbic
opened
5 months ago
13
Cytoscape layout plugin to support Cytoscape.js layouts
#228
hasanbalci
closed
2 months ago
6
GPML support in Newt
#227
hasanbalci
closed
2 months ago
4
Improve data upload and add geneset support to openPIP
#226
MoHelmy
closed
2 months ago
20
Validation service for biological maps
#225
ugurdogrusoz
closed
1 year ago
5
Automate Cytoscape.js release process using GitHub Actions
#224
maxkfranz
closed
1 year ago
4
Cytoscape.js extension template using ESM
#223
maxkfranz
opened
1 year ago
20
Supporting ssGSEA and Pathway Commons in clusterProfiler
#222
cannin
closed
1 year ago
18
Setting up the CI/CD with Github Actions on Graphspace
#221
yash170106065
closed
1 year ago
15
Setting up the CI/CD with Github Actions on Graphspace
#220
yash-jm
closed
1 year ago
0
Prototype COSE Network Layout Algorithm to Support Biological Context for Layouts More Intuitive to Humans
#219
cannin
opened
1 year ago
15
Making biological network knowledge discoverable and accessible on search engines
#218
cannin
opened
1 year ago
41
Generate Example Dataset for PyTorch Geometric Based on Pathway Commons and Prototype
#217
cannin
closed
1 year ago
16
Implement a R Shiny Module for Network Analysis in CellMinerCDB
#216
cannin
closed
1 year ago
3
Python SBOL2 <-> SBOL3 converter
#215
jakebeal
closed
5 months ago
7
Tools for Network Biology
#213
chapaith
closed
1 year ago
1
GitHub Action to support WikiPathways curation
#212
egonw
closed
1 year ago
12
High-throughput simulation for computational cell biology with Cloud-COPASI
#211
hasanbaig
closed
2 years ago
9
Integrate the CausalPath Algorithm with the existing CausalPath Cytoscape App
#210
cannin
closed
1 year ago
5
Create Patient Data Similarity Networks using TumorComparer
#209
cannin
closed
1 year ago
9
Improving web service for layout and rendering of networks
#208
ugurdogrusoz
closed
1 year ago
9
SBML-MINERVA support in Newt
#207
amazein
closed
2 years ago
4
AnnotateMe - Interactive tool for the annotation of SBML models
#206
matthiaskoenig
closed
2 years ago
10
ImageJ plugin for VCell modeling framework
#205
vcellmike
closed
1 year ago
1
Palette Creator app for Cytoscape
#204
scootermorris
closed
1 year ago
8
Improve the visualization capabilities in clusterMaker2
#203
scootermorris
closed
1 year ago
4
Add new community detection/clustering algorithms to clusterMaker2
#202
scootermorris
closed
1 year ago
3
Expanding Community Detection Algorithms in netboxr
#201
cannin
closed
2 years ago
2
Schema and UI designer for Cytoscape.js
#200
ugurdogrusoz
closed
1 year ago
7
Updates to the Enrichment Table App
#199
AlexanderPico
closed
2 years ago
8
Cytoscape App Store Upgrade
#198
AlexanderPico
opened
2 years ago
26
Develop new features for Cytoscape App - cyPlot
#197
yihangx
closed
1 year ago
48
Utilize the T5 Text-to-Text Transformer to Generate Descriptions of Interactions from Pathway Commons using WebNLG
#196
cannin
closed
1 year ago
10
Create a Pipeline to Utilize CellMinerCDB Pharmacogenomics Data with the Graph-Based Neural Network for Drug Response Prediction
#195
cannin
closed
2 years ago
11
Develop a Reactome Curation Support Tool that Maps Text to the Reactome Pathway Hierarchy
#194
cannin
closed
1 year ago
4
NetBoxR Updates: Develop a Galaxy Platform Entry for NetBoxR, Pipeline for Processing cBioPortal Data, and Module Analysis Features
#193
cannin
closed
2 years ago
7
Create Jupyter Notebooks Showcasing COMBINE Standards
#192
cannin
closed
2 years ago
11
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