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nrnb
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GoogleSummerOfCode
Main documentation site for NRNB GSoC project ideas and resources
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Expand Virasig, a dockerized viral mutational signatures framework pipeline.
#191
marcoxa
closed
1 year ago
1
Implement an SBML simulator in pure Rust
#190
funasoul
closed
1 year ago
14
Improve the generation and customization of the analysis report of GeneCloudOmics
#189
MoHelmy
closed
2 years ago
3
Adding visualization of protein-complex interaction to openPIP
#188
MoHelmy
closed
2 years ago
3
SnapGene / SBOL3 integration
#187
jakebeal
closed
5 months ago
21
Benchling SBOL3 App
#186
jakebeal
closed
1 year ago
19
High level abstraction components for pySBOL3
#184
Gonza10V
closed
1 year ago
25
Conversion between GenBank and SBOL3
#183
jakebeal
closed
2 years ago
12
Implement pySBOL3 validation rules
#182
jakebeal
closed
5 months ago
35
Transform Xconnector python package to shiny web app
#181
Proteomicslab57357
closed
3 years ago
9
Convert CellBox TensorFlow Code to PyTorch
#180
cannin
closed
1 year ago
26
Additional Clustering (Community Detection) Algorithms for Cytoscape
#179
scootermorris
closed
3 years ago
6
Create Google Colab Notebook(s) Showcasing COMBINE Standards
#178
cannin
closed
2 years ago
18
Develop a Standalone CellDesigner to BioPAX Converter
#177
cannin
closed
3 years ago
5
Improve the GPML to SIF Converter in the Cytoscape WikiPathways App
#176
cannin
closed
3 years ago
0
Develop a Configurable Converter of JSON Data to the BioPAX Format
#175
cannin
closed
2 years ago
11
Develop a Pipeline for Processing CPPA Proteomics Portal via the TargetScore Algorithm
#174
cannin
closed
5 months ago
11
Make Pathway Diagram Collections Accessible via the Systems Biology Graphical Notation
#173
cannin
closed
1 year ago
7
Develop a Galaxy Platform Entry for NetBoxR and a Pipeline for Processing cBioPortal Data via the NetBoxR
#172
cannin
closed
2 years ago
4
Improve the TumorComparer R Package (Add Network Visualization and Available Data Types)
#171
cannin
closed
3 years ago
7
Develop an Exporter of CellBox Models to SBML
#170
cannin
closed
2 years ago
12
Develop a Cytoscape App for the CausalPath Algorithm
#169
cannin
closed
3 years ago
23
Develop a Reactome Curation Support Tool that Maps Text to the Reactome Pathway Hierarchy
#168
cannin
closed
2 years ago
8
Interactive Systems Biology Analyses using COPASI's R or Python APIs
#167
cannin
closed
2 years ago
26
Prepare cyjShiny for R Package Repository Submission
#166
cannin
closed
3 years ago
17
Simple Enrichment Tool for Cytoscape
#165
AlexanderPico
closed
3 years ago
7
Interactive SBML report for Humans (SBML4Humans)
#164
matthiaskoenig
closed
3 years ago
9
Enhancing the admin panel of openPIP
#163
MoHelmy
closed
3 years ago
4
Adding analysis report and Direct import from GEO databases to ABioTrans Plus
#162
MoHelmy
closed
3 years ago
6
Adding Multi-omics data support to ABioTrans Plus
#161
MoHelmy
closed
3 years ago
8
Implement an SBML simulator in pure Rust
#160
funasoul
closed
3 years ago
28
Building a simulation execution environment using Github Action
#159
funasoul
closed
2 years ago
8
Local DB support for SBGN maps in Newt
#158
ugurdogrusoz
closed
3 years ago
3
PD to AF conversion service and its support in Newt
#157
ugurdogrusoz
closed
3 years ago
8
SynBioHub Plugin to Convert Spreadsheets to SBOL
#156
cjmyers
closed
4 years ago
9
Integration of sequence visualization into SynBioHub
#155
cjmyers
closed
4 years ago
5
Expand ModelBricks.org to add user-run simulations
#154
vcellmike
closed
1 year ago
11
Enhance http://compmodelmatch.org/
#153
vcellmike
closed
1 year ago
4
Machine Learning for Network Layout Algorithms
#152
AlexanderPico
opened
4 years ago
24
Universal Property Display in Cytoscape
#151
AlexanderPico
closed
2 years ago
18
Generating detailed genetic logic circuit models using GeneTech
#150
hasanbaig
closed
4 years ago
14
PathwayMapper viewer and editor improvements
#149
ugurdogrusoz
closed
4 years ago
5
Develop GUI for ImageJ groovy script calling VCell API
#148
vcellmike
closed
2 years ago
4
Develop LACE-view: a visualizer for Longitudinal Clonal Trees
#147
marcoxa
closed
4 years ago
26
Adding Network Analysis and Visualisation Features to ABoiTrans
#146
MoHelmy
closed
4 years ago
16
Develop a Slack Bot to Improve the Results of Text Extraction of Biomedical Interactions
#145
cannin
closed
4 years ago
6
Develop a Web Service for Rendering SBGN Diagrams
#144
cannin
closed
3 years ago
16
Develop/Update R Shiny Interface for SBGN Diagrams using the Javascript SBGNViz Library
#143
cannin
closed
2 years ago
0
Develop/Update Web Interface for Natural-Language Processing Extracted Interaction Network
#142
cannin
closed
4 years ago
7
Simulation of systems biology models in Java: support for new features
#141
draeger
closed
4 years ago
5
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