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nrnb
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GoogleSummerOfCode
Main documentation site for NRNB GSoC project ideas and resources
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Develop a system that generates various spatial SBML models using deep learning
#140
funasoul
closed
4 years ago
15
Implement more graph algorithms for Cytoscape.js
#139
ugurdogrusoz
closed
3 years ago
4
Experiment data overlay in Newt
#138
ugurdogrusoz
closed
4 years ago
6
Update JSON scheme and implementation for SBML
#137
matthiaskoenig
closed
4 years ago
6
Develop/Update a Cytoscape 3 app for RDF
#136
matthiaskoenig
closed
3 years ago
10
Implementation of web services versions of clusterMaker clustering algorithms
#135
scootermorris
closed
3 years ago
5
Development of a Cytoscape app for the IntAct database
#134
scootermorris
closed
4 years ago
0
Web service for various layout algorithms
#133
ugurdogrusoz
closed
4 years ago
1
A new BridgeDb major release
#132
egonw
closed
5 years ago
16
Develop MAREA/JS: a cytoscape.js visualizer for Metabolic Rewiring analysis
#131
marcoxa
closed
3 years ago
5
Integration of hierarchical molecular networks into the NDEx platform
#130
ikuperst
closed
4 years ago
4
Native Python support for the Synthetic Biology Open Language (SBOL)
#129
jamesamcl
closed
4 years ago
8
State of the Art Build System for the Plugin Framework "InSilico"
#128
draeger
closed
5 years ago
4
Circular layout in Cytoscape.js
#127
ugurdogrusoz
closed
5 years ago
5
Extending ModelPolisher to a universal model annotation tool
#126
draeger
closed
5 years ago
5
Improved rendering of genetic designs using VisBOL
#125
cjmyers
closed
3 years ago
6
Fast layout algorithm with compound support
#124
ugurdogrusoz
closed
4 years ago
2
Integrating PathwayMapper into cBioPortal
#123
ugurdogrusoz
closed
6 years ago
1
App Store for Cytoscape
#122
AlexanderPico
closed
2 years ago
23
Web service for SBGN <-> BioPAX conversions, and some other BioPAX related operations
#121
ozgunbabur
closed
3 years ago
4
Validation of spatial systems biology models in Java™
#120
draeger
closed
5 years ago
25
BioPAX to SBGNML conversion
#119
ugurdogrusoz
closed
6 years ago
1
Web application for interactive network visualization of gene list data
#118
jvwong
closed
5 years ago
6
Parametric SVG as a flexible format for Synthetic Biology Open Language Visual (SBOLv) symbols
#117
chofski
closed
4 years ago
35
Create Cytoscape Automation services based on existing code libraries
#116
bdemchak
closed
5 years ago
9
Automate fundamental biology workflows using new Cytoscape Automation
#115
bdemchak
closed
4 years ago
6
GraphSpace: Implement a machine-readable graph legend interface
#114
adbharadwaj
closed
5 years ago
19
GraphSpace: "Diffs" for graphs
#113
adbharadwaj
closed
5 years ago
7
GraphSpace: Git for graphs
#112
adbharadwaj
closed
6 years ago
7
Implement a comment/discussion system in GraphSpace
#111
adbharadwaj
closed
4 years ago
16
Write Swagger Specification for Pathway Commons and Produce R Client
#110
cannin
closed
3 years ago
4
Build an Web Interface for Natural-Language Processing Extracted Interaction Network
#109
cannin
closed
5 years ago
5
Implement Array Support in Antimony
#108
hsauro
closed
4 years ago
8
Implement SBML Array Support in libRoadRunner
#107
hsauro
closed
6 years ago
1
Developing an Optimization Library for libRoadRunner
#106
hsauro
closed
4 years ago
25
Adding Direct Runtime Access to Models in libRoadRunner
#105
hsauro
closed
4 years ago
0
Develop cyTRON/JS: a backend and a cytoscape.js visualizer for cancer progression models
#104
marcoxa
closed
6 years ago
3
Making network-based patient classifier scalable to larger datasets
#103
shraddhapai
closed
5 years ago
13
Improvements for Newt, a Cytoscape.js based SBGN editor
#102
ugurdogrusoz
closed
6 years ago
1
JSEDML: Java Library for Simulation Experiment Descriptions
#101
matthiaskoenig
closed
3 years ago
3
Develop a simulator which will support all the features of SBML core specification
#100
funasoul
closed
3 years ago
4
Integrating CAD and CAM tools for automating a synthetic biology workflow
#99
eoberortner
closed
6 years ago
73
Develop spatial simulation packages for systems biology
#98
funasoul
closed
5 years ago
3
Model scripting for systems biology using Antimony in Java
#97
draeger
closed
3 years ago
8
Simulating systems biology models in Java
#96
draeger
closed
6 years ago
11
Template for new project ideas
#95
khanspers
closed
2 years ago
2
Typescript & JSDoc support for Cytoscape.js
#94
maxkfranz
closed
3 years ago
10
Publish a spreadsheet as an editable graph/network visualisation
#93
maxkfranz
closed
5 years ago
5
Label Propagation Algorithm
#92
maxkfranz
closed
5 years ago
4
Implement a Cytoscape app for GraphSpace.
#91
adbharadwaj
closed
7 years ago
4
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