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The gene `SETD5` is associated with `Mental retardation, autosomal dominant 23`. If I use `intellectual disability`/ `HP:0001249` the phenotype score is 0 (PhenIX and hiPHIVE). The strange thing is th…
visze updated
7 years ago
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though the 64 pipeline fig looks great,
that a bunch that are 0.0001 sig have a higher mean than those with 0.005 sig i think will raise questions we don't want to have to answer.
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When I run jannovar-cli-0.18.jar annotate-vcf , I got some problems.
The exception is:
```
Extending header with INHERITANCE...
Exception in thread "main" java.lang.NullPointerException
at de.c…
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Dear Tod,
I wonder if you could help me on the issue that I have mentioned in my previous thread.
It was established that SPM cant not be used for my data because I only have one trial.
How would yo…
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For Rob:
less motivation, but still make it clear
more math
keep same structure: basic hyps, results, new hyps, results
learning hyps by around 21 mins
make sure to walk through chain of logic:
neu…
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When I do `bcftools view -i 'MQRankSum="."'`, then this record is printed:
10 67402 . C A 52.98 . ABHom=1;AC=2;AF=1;AN=2;BaseCounts=2,0,0,0;DP=2;Dels=0;ExcessHet=3.0103;FS=0;GC=41.65;HaplotypeS…
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Hello
As presented here:
http://stackoverflow.com/questions/38454893/error-in-scipy-wilcoxon-signed-rank-test-for-equal-series?noredirect=1#comment64315624_38454893
(without no answer to disprove it a…
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fig 2
- [x] remove line
fig 3
- [x] only 1 legend in fig (remove 2?)
- [x] update caption for n & F
- [x] swap rows of discrimin vs pca
fig 5
- [x] put raw in appendix
- [x] weighted means for both …
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Another thing is with the returned metric values. To do statistical tests, e.g. t-tests, more samples are needed and by increasing number of folds just to get over 30 samples is simply too time costly…
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The area under the ROC curve (AUC) metric is non-differentiable, but a differentiable approximation exists (Calders & Jaroszewicz, 2007) that is based on the AUC's interpretation as the probability th…