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Hello,
I have a question about how the VDJs are assigned to the contigs.
I have a trust4_cdr3.out, and I can see for example for malignant cells in my data, there are multiple VDJs. How is this po…
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Analisando com a equipe de marcação e com a equipe de desenvolvimento concluirmos que a tag ``, pode conter conteúdos variados, ex.:
- `1`
- `1 (suppl)`
- `1 (suppl.)`
- `1 suppl`
Reparem que esse…
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Hi, thank you for creating **figeno** and making it public. It is very useful for me.
I would like to ask you some suggestions.
- Could you let me know if it is possible to plot inverted BigWig …
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Hello,
I have embryos from 129S1 (paternal) mice × B6D2F1/J (F1 of C57BL6NJ × DBA2J, maternal) mice. How can I make the genome preparation？
Is
SNPsplit_genome_preparation --vcf mgp.v5.merged.s…
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When I provide with a custom reference and genes file. I got error message for regions "chr" as "18" or "chr18"
Traceback (most recent call last):
File "/home/u/s176815/.local/bin/figeno", line 8,…
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I have a splicing paper and I don't know which GO term to use.
PMID:36095128
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Title | Splicing of branchpoint-distant exons is promoted by Cactin, Tls1 and the ubiquitin-fold-activated Sde2.
A…
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Discussed on group call that such a page would be a useful addition.
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Curated by @jingluodatacurator
https://canto.phi-base.org/curs/fa6dafc2380a5876
Notes:
Uniprot IDs: G4XX47, G4XX53, G8EI90
~Strains~ Genes/proteins: SdhB, SdhC, SdhD (see Table 3 and Table 4)…
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Bringing in the below questions from #363, which were off-topic for the containing issue but worth discussing:
>What is the artificial (or generally acceptable) boundary between CNV versus tandem r…
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Dear Fraternali Lab team,
I hope you are doing well.
I am currently working with your package to analyse the class-switch of a sample from which we have single-cell RNAseq and VDJ sequencing dat…