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Dear all,
I am running **SynTracker v1.3.0** on a haploid fungal reference genome with the default parameters.
For many of the .tab BLAST output files I get an error message, that it contains **…
ghost updated
1 month ago
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It would be good to implement at least some basic testing and CI. The first step would be to come up with a standard small dataset to run against.
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My database contains lots of genomes, over 15k bacterial and all fungi from genbank, so it is unlikely for a result with 0 overlap. Also I had already run Clark and Kaiju and both return good results.…
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This issue will collect all feedback submitted via the feedback form at the end of each tutorial
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Results have been [aggregated](https://nbviewer.jupyter.org/github/bebatut/galaxy-training-m…
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Command:
```
antismash --cb-knownclusters --cb-subclusters --asf --cpus 8 \
--genefinding-tool prodigal --executable-paths meme=./bin/scripts/meme \
--databases /ebio/abt3_projects/dat…
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Wicked fast indeed! Are there any plans to extend salmon to also detect gene fusion events? There isn't a fast and accurate way to do that yet, only approaches requiring full alignments. Most often a …
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Hello,
I'd like to use Corason on a Google Colab virtual machine, but sadly they don't support Docker and have no plans to do so (https://github.com/googlecolab/colabtools/issues/299). Unlike most …
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Prokka produces an issue in the first LOCUS line of the GBK file when using Spades contig files.
Example :
LOCUS NODE_1_length_148773_cov_5.072501148773 bp DNA linear
Instead there shoul…
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Dear bakta team,
We ran bakta on several bacterial genomes, with >50% estimated compl. and
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Hi,
I found a significant issue in the pileup file where some positions have both "+" and "-" directions. However, a specific position cannot have two A bases. it should be either A or T. This issu…