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At the very last step of the workflow, I encounter this error:
```
Module 'bamtools: 'Stats for BAM file(s)' not found in the file 'A12345_genome_results'
```
I looked at the data and it did n…
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We either find another tool for bam QC, or we ask for multi-threaded version of Alfred or we investigate on allocating more resources to this step, which I'm working on testing.
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Hey!
Enjoying the package so far, just having difficulties with this error, details below.
The error arises when I try to split using any more than one chromosome as input to splitGAlignmentsByC…
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I'm getting further with getting toil-rnaseq to run, but it's still not going all the way. Now I seem to be dying with `OSError: [Errno 2] No such file or directory: '/data/work/toil-59fec6ca-1a65-4a…
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**Description of bug:**
We are using docker images from dockerhub (`docker pull ewels/multiqc:1.10.1`) but the app is failing at the GATK module. We do not have any files for the GATK module
**M…
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**Description of bug:**
Using [DamageProfiler 0.5.0](https://github.com/Integrative-Transcriptomics/DamageProfiler), I get a result file that breaks MultiQC, see below.
**MultiQC Error log:**
```…
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With a fresh install of Nextflow v20.10.0, I am trying to run the Sarek test pipeline using the awsbatch executor. My command line is:
```
nextflow run nfcore/sarek -profile test,awsbatch --awsque…
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Hello again,
I tried to run the methylseq pipeline, using docker:
`nextflow run nf-core/methylseq -profile test,docker`
I got the following error:
```
[0;35m[nf-core/methylseq] Pipeline compl…
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If sequences in the BAM file do not appear in the given alignment reference, analysis dies (see below for error).
Make a more informative error message, or (if possible) prevent the error from happ…
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**Description of bug:**
Qualimap: mean coverage computation for general statistics seems incorrect.
**MultiQC Error log:**
MultiQC Report:
![image](https://user-images.githubusercontent.com/248…