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mskcc
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tempo
CCS research pipeline to process WES and WGS TN pairs
https://cmotempo.netlify.com/
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conpair channel bug
#1014
anoronh4
opened
2 months ago
0
fix conpair channel
#1013
anoronh4
closed
2 months ago
1
Feature/upgrade delly v126
#1012
anoronh4
opened
3 months ago
1
replace or upgrade delly
#1011
anoronh4
opened
4 months ago
0
Add assay type to MultiQC output.
#1010
price0416
opened
5 months ago
0
use Channel.interval() factory instead of watchPath
#1009
anoronh4
opened
5 months ago
1
emit original quals
#1008
anoronh4
closed
5 months ago
1
clean up ngi-genomes folder
#1007
anoronh4
opened
6 months ago
0
update test-data link for travis
#1006
anoronh4
closed
6 months ago
0
removed deprecated pipeline.nf mentions from docs
#1005
anoronh4
closed
6 months ago
1
remove pipeline.nf from docs for dsl2
#1004
anoronh4
closed
6 months ago
0
enabled storeDir for dsl2
#1003
anoronh4
closed
5 months ago
0
Aggregate from Path will fail in certain aggregation process when certain samples have non-complete subworkflow
#1002
gongyixiao
opened
8 months ago
0
allow storeDir for RunBQSR
#1001
anoronh4
opened
9 months ago
1
storeDir option doesn't work for all modules
#1000
anoronh4
opened
9 months ago
1
update multiqc
#999
anoronh4
opened
9 months ago
0
Broken links in documentation
#998
johnoooh
closed
6 months ago
0
Improvement for cohort multiqc report html
#997
gongyixiao
opened
10 months ago
0
Merge master hotfix back into develop
#996
anoronh4
closed
10 months ago
1
update netlify documentation link
#995
anoronh4
closed
10 months ago
1
brass fails when input bai file does not having the expected naming convention
#994
anoronh4
opened
10 months ago
0
fix empty bedpe
#993
anoronh4
closed
8 months ago
0
update pipeline DAG visualization in documentation
#992
anoronh4
opened
11 months ago
0
Merge hotfix/1.4.4 back into develop
#991
anoronh4
closed
11 months ago
1
Hotfix/1.4.4
#990
anoronh4
closed
1 year ago
1
lohhla read.table bug
#989
anoronh4
closed
1 year ago
0
Facets output incompatible with Facets Preview
#988
anoronh4
closed
1 week ago
1
Fixed facets zygosity annotation of maf
#987
anoronh4
closed
9 months ago
1
moved process directives that use dot (.) notation to a process closure
#986
anoronh4
closed
1 year ago
0
define intermediates_dir for rmarkdown rendering
#985
anoronh4
closed
1 year ago
0
Bug with biocircos plotting
#984
anoronh4
closed
1 year ago
0
Fix malformed Strelka VCFs
#983
anoronh4
closed
1 year ago
1
Remove unnecessary files from SvABA published files
#982
anoronh4
opened
1 year ago
2
Bugfix/shorten combine mutect2 vcf cmd
#981
gongyixiao
closed
11 months ago
0
bugfix/ lohhla should not turn onn mutsig subworkflow
#980
gongyixiao
closed
1 year ago
1
Bugfix/workflow logic issues
#979
anoronh4
closed
1 year ago
1
nextflow updates causing errors in execution
#978
anoronh4
opened
1 year ago
3
ClusterSV and SVSignature need to handle empty input bedpe
#977
gongyixiao
closed
1 year ago
0
SomaticCombineMutect2Vcf force sample name override header
#976
gongyixiao
opened
2 years ago
0
minor issues in logic for dsl2
#975
anoronh4
closed
1 year ago
0
sampleQC_wf:SampleRunMultiQC won't run for WGS because no CollectHsMetrics is run.
#974
gongyixiao
closed
1 year ago
0
Dsl2/documentation updates
#973
price0416
closed
2 years ago
1
Dsl2/enhancement/wgs sv
#972
anoronh4
closed
1 year ago
0
updated docs for enhanced SV workflow
#971
anoronh4
closed
1 year ago
0
Simplified target/bait inputs
#970
anoronh4
opened
2 years ago
1
Dsl2/enhancement/sv sigs
#969
anoronh4
closed
1 year ago
3
add custom read support filters in Delly and Manta Somatic calling
#968
anoronh4
closed
2 years ago
1
Zygosity annotation of mutations should be done with hisens rather than purity
#967
anoronh4
opened
2 years ago
1
Dsl2/merge any sv caller
#966
anoronh4
closed
2 years ago
0
Dsl2/filter sv blacklist
#965
anoronh4
closed
2 years ago
3
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