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mskcc / tempo

CCS research pipeline to process WES and WGS TN pairs
https://cmotempo.netlify.com/
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Facets output incompatible with Facets Preview #988

Closed anoronh4 closed 1 week ago

anoronh4 commented 1 year ago

https://github.com/mskcc/tempo/blob/2ea61ff7e0012112426df3d35a03ca4879024e14/modules/process/Facets/DoFacetsPreviewQC.nf#L24

the DoFacetsPreviewQC module copies the facets_qc.txt and only publishes the copy. This file is not recognized by Facets Preview

Also facets_manifest.txt should ideally be generated for ease of use with facets preview, although i'm not sure how to generate that.

price0416 commented 1 week ago

Addressed this issue in facets preview. Facets preview will now accept any file that contains facets_qc.txt as part of its file name.