TEMPO

Tempo is a CMO Computational Sciences (CCS) research pipeline processing WES & WGS tumor-normal pairs using the Nextflow framework. Currently the pipeline is composed of alignment and QC, and detection of both somatic alterations and germline variants. Users can begin with inputs of either paired-end FASTQs or BAMs, and process these via the command line.

For further details of how to begin processing data with Tempo, please view our documentation. For contributing to this project, please make a pull request as detailed here.

The inspiration for this project derives from Sarek, developed at SciLifeLab.

Pipeline Flowchart

Directed Acyclic Graph