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mskcc
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tempo
CCS research pipeline to process WES and WGS TN pairs
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Dsl2/merge any sv caller
#966
anoronh4
closed
2 years ago
0
Dsl2/filter sv blacklist
#965
anoronh4
closed
2 years ago
3
Optimize this line using wild card to shorten the printed command.
#964
gongyixiao
closed
1 year ago
0
bugfix for single bam input into MergeBamsAndMarkDuplicates
#963
anoronh4
closed
2 years ago
0
associate errorStrategy with maxRetries
#962
gongyixiao
closed
2 years ago
0
fix tag warning
#961
gongyixiao
closed
2 years ago
0
Enhancement/bam2fastq
#960
gongyixiao
opened
2 years ago
2
Germline Maf PublishDir fix
#959
gongyixiao
closed
2 years ago
0
Bugfix - HsMetrics Input for WGS
#958
anoronh4
closed
2 years ago
0
SampleRunMultiQC not running for WGS mode
#957
gongyixiao
closed
2 years ago
1
Dsl2/feature/svaba brass
#956
anoronh4
closed
2 years ago
1
fix bam size calculation issue
#955
gongyixiao
closed
2 years ago
0
QcAlfred target bugfix
#954
anoronh4
closed
2 years ago
1
QcAlfred bug
#953
anoronh4
closed
2 years ago
0
MergeBamsAndMarkDuplicates resource allocation wrong.
#952
gongyixiao
closed
2 years ago
0
Dsl2/master
#951
gongyixiao
closed
2 years ago
0
Dsl2/full travis test
#950
gongyixiao
closed
2 years ago
0
Dsl2/full travis test
#949
gongyixiao
closed
2 years ago
0
add facets base image to tempo repo
#948
anoronh4
closed
2 years ago
0
Original quality scores are not kept in bams after BQSR
#947
anoronh4
closed
7 months ago
1
Dsl2/reorganize modules
#946
gongyixiao
closed
2 years ago
0
Dsl2/aggregate rewrite
#945
gongyixiao
closed
2 years ago
0
Dsl2/feature/hrdetect
#944
anoronh4
closed
2 years ago
0
Dsl2/hotfix 1.4.3
#943
gongyixiao
closed
2 years ago
0
Dsl2/change back process name
#942
gongyixiao
closed
2 years ago
0
hotfix_sync_develop/1.4.3
#941
gongyixiao
closed
2 years ago
0
Conpair completes successfully, but has empty output
#940
anoronh4
closed
2 years ago
1
facets-suite-preview Docker base image origin undocumented.
#939
gongyixiao
closed
1 year ago
1
Singularity runOptions add parameters to avoid loading home directory libraries for R or Python
#938
gongyixiao
opened
2 years ago
0
hotfix/1.4.3
#937
gongyixiao
closed
2 years ago
5
Update oncoKB annotator version
#936
gongyixiao
opened
2 years ago
1
Dsl2/aggregate rewrite
#935
gongyixiao
closed
2 years ago
0
Dsl2/germline adjustment
#934
price0416
closed
2 years ago
0
Dsl2/run mode checking
#933
gongyixiao
closed
2 years ago
0
Filtering BRCA Exchange Variants not working properly
#932
gongyixiao
closed
2 years ago
0
fix publishdir path for intermediate germline calls
#931
anoronh4
closed
2 years ago
0
Enhancement/ Annotate and filter merged SV calls
#930
anoronh4
closed
2 years ago
1
Release/1.4.2
#929
anoronh4
closed
2 years ago
0
Maf files from GenomeNexus
#928
price0416
opened
2 years ago
1
add cdna contamination calculation
#927
anoronh4
closed
2 years ago
1
calculate cdna contamination
#926
anoronh4
closed
1 year ago
0
updated /ifs/archive and BRCA sample paths in test input files
#925
anoronh4
closed
3 years ago
2
`QcConpair` exits with error
#924
anoronh4
opened
3 years ago
1
Enhancement/qc status finetune
#923
anoronh4
closed
2 years ago
2
Rescue mutations that are oncogenic at 2% frequency
#922
anoronh4
opened
3 years ago
1
Make QC summary available for other trackers to use.
#921
anoronh4
closed
2 years ago
2
Error in `SampleRunMultiQC` and `CohortRunMultiQC`
#920
anoronh4
closed
2 years ago
0
fixed FILTER tag addition for maf generation
#919
anoronh4
closed
3 years ago
1
add_tag function bug for filter-*-maf.R
#918
anoronh4
closed
3 years ago
0
synchronize hotfix in master back to develop
#917
anoronh4
closed
3 years ago
0
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