Conpair completes successfully, but has empty output

[anoronh4]

for example:

for i in ./* ; do echo $i ; cat $i ;done
./s_C_38H0A0_P001_d__s_C_38H0A0_N001_d.concordance.txt
concordance s_C_38H0A0_P001_d
s_C_38H0A0_N001_d   NA
./s_C_38H0A0_P001_d__s_C_38H0A0_N001_d.contamination.txt
Sample_Type Sample_ID   Contamination

cat .exitcode 
0

cat .command.out 
1 vs 1 and total= 1
5.83394098282
Estimate contamination of s_C_38H0A0_P001_d.pileup and s_C_38H0A0_N001_d.pileup
4.57260084152

clearly there is some calculation occurring but it is unclear why the final output is missing this info.

this is found in the work directory: work/34/1dbb2e32e0bbee3ecb6af4bd684af0

[anoronh4]

found to be a disk quota issue when the pileups were created (february of last year)

the problem should hopefully be resolved by deleting the old QcPileup cache of those processes.