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mskcc / tempo

CCS research pipeline to process WES and WGS TN pairs
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enabled storeDir for dsl2 #1003

Closed anoronh4 closed 6 months ago

anoronh4 commented 9 months ago

Addresses #1000 . Very similar to #1001 but for the dsl2 version of the pipeline, and merging to the develop branch, rather than for the dsl1 version and merging directly to master.

Currently only the alignment_wf has been adjusted, and no config file for enabling storeDir has been added to the branch. Suggested config usage for now is:

process {
    withName: 'alignment_wf:.*' {
        storeDir = { "storeDir/${task.process}/${task.tag}/" }
    }
}

and specifying the file to nextflow using -c my_config