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mskcc / tempo

CCS research pipeline to process WES and WGS TN pairs
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Simplified target/bait inputs #970

Open anoronh4 opened 2 years ago

anoronh4 commented 2 years ago

Previously we have required several tempo files to be generated for each baitset. The processes for generating files such as the coding bed, the intervals list, etc, were not well-documented or formalized, which presents a problem for ease of use and standardization. This PR aims to simplify that process by only requiring the targets.bed and baits.bed and creating the other necessary files within Tempo with a new process.

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