mskcc / tempo

CCS research pipeline to process WES and WGS TN pairs
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remove pipeline.nf from docs for dsl2 #1004

Closed anoronh4 closed 8 months ago

anoronh4 commented 8 months ago

even though pipeline.nf is deprecated in the develop branch, the script is mentioned 5 times in the docs. We need to remove and make sure any commands are updated to dsl2 usage as well.