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Hello! Thanks for this tool, very much looking forward to exploring.
For the `scMappR_and_pathway_analysis()` function, what normalization would be appropriate (/required) for the bulk RNA-seq count…
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Hello and thank you for this wonderful package.
I was attempting to look at the vignette after installing Bisque RNA successfully, and when running browseVignettes("BisqueRNA")
I got No vignettes …
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Hello @mblue9 here we go with the next! XD
We need to get from 3 to 1 hour between bulk and single-cell.
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/Novartis/granulator
Confirm the following by edit…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/LTLA/celldex
Confirm the following by editing eac…
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Hello!
I want to use BisqueRNA for deconvolution of a specific part of bulk tissue.
The bulk tissue has 4 part biologically: part A, B, C, D, while their cell type composition is totally different.…
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**Submitting author:** @TomKellyGenetics (S. Thomas Kelly)
**Repository:** https://github.com/TomKellyGenetics/graphsim
**Version:** v1.0.0-joss
**Editor:** @majensen
**Reviewer:** @rcannood, @corybru…
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Hi authors, I am a researcher working with many lung cancer samples, and I recently saw your paper on iScience and I am interested to apply them to my bulk RNA-seq data. I have a set of normal lung ti…
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This is something I have been doing with Alexi/Grant/Rashmi that I feel is very useful for bulk datasets. It uses marker genes from a comparable single cell dataset to estimate the proportion of diffe…
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Hi, thanks for your great tool!
I have some questions about the input data.
Should I input **pre-normalized values** (e.g. TPM / FPKM / CPM or their log values) or just **raw counts** for both bu…
QqQss updated
5 years ago