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Hi there! I'm running into a problem with my dada2. My data is 16S V4 region microbiome data and I've removed primers prior to dada2 with cutadapt.
out _Error in filterAndTrim(fnFs, filtFs, fnRs, …
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![image](https://user-images.githubusercontent.com/5671771/142134360-71e14575-d7e7-46a9-8665-d12812a72cec.png)
_Originally started in Oct; Re-started in 2021-11-16_
## Chapter 1 To Sleep
- To a…
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Hi Anders!
This is an excellent package! And one of the few to accept repeat measures intelligently! (talking to you vegan)
I commend you on making it so user friendly. I have a special use case (…
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Hi Drs,
I tried to use this software to run learnErrors. I have been running for three or four days with no results, how can I solve it?
reads.in reads.out
Gr1m1-1_R1_00…
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Hello,
I'm currently trying to use dada2 to analyze some pacbio hifi amplicon data that is for near full rRNA operons (~ 4kb). I have a few questions about the optimal way to run dada2 for my data…
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Hello!
I am having difficulties to explain the expected and the true final amplicon size (after preprocessing). I am reading some forum posts in which @benjjneb suggests that v3v4 amplicon size sho…
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Hi statdivlab,
With great interest, I followed the recent seminar on the EMBL platform: Statistical thinking of microbial ecology
First of all, thank you all very much for developing tools for mi…
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I have some trouble to run sckmer.r
here is the error message.
`Error in `[.data.table`(taxa_out, , `:=`(c("r1", "r2"), data.table::tstrsplit(V5, :
Supplied 2 columns to be assigned 26 items. P…
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Hi, thank you for sharing us this great pipeline! I wonder if there any solution for fetching all the images needed before executing the pipeline?
I've tried with `nf-core download` (which may not…
lam-c updated
9 months ago
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Connect NMDC EDGE to core NMDC orchestration services
NMDC EDGE61 is currently powered by a cluster computing service managed by SDSC. We will implement
automation functions in NMDC EDGE to execute wo…