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EBI-Metagenomics
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genomes-catalogue-pipeline
MGnify genome analysis pipeline
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Rnacentral updates
#110
tgurbich
closed
4 days ago
0
Feature/improve antismash processing
#109
tgurbich
closed
3 months ago
0
Dev
#108
tgurbich
closed
3 months ago
0
Added new file types to the readme generation script
#107
tgurbich
closed
3 months ago
0
Added an empty mobilome clean up script
#106
tgurbich
closed
3 months ago
0
Bug fix/ncrna file publishing
#105
tgurbich
closed
3 months ago
0
Added memory to prokka
#104
tgurbich
closed
3 months ago
0
Added tax scope to eggnog to match mettannotator
#103
tgurbich
closed
3 months ago
0
Update fetching script
#102
tgurbich
closed
3 months ago
0
Add tools
#101
tgurbich
closed
3 months ago
0
Improve qc
#100
tgurbich
closed
3 months ago
0
Update README.md
#99
mberacochea
closed
5 months ago
0
Bump requests from 2.31.0 to 2.32.0
#98
dependabot[bot]
closed
1 week ago
0
Dev
#97
tgurbich
closed
6 months ago
0
Conditional usage of IQTree or FastTree
#96
mberacochea
closed
7 months ago
0
Checkm2
#95
tgurbich
closed
6 months ago
0
Fix/modify deduplicate script
#94
KateSakharova
closed
7 months ago
0
V2.2.2 prep
#93
tgurbich
closed
6 months ago
0
Update fetch script
#92
tgurbich
closed
7 months ago
0
Minor adjustments to run the pipeline in Codon + Slurm
#91
mberacochea
closed
7 months ago
0
Changes to how eggnog is parsed; removed empty values from annotated gff
#90
tgurbich
closed
7 months ago
0
Bump black from 23.1.0 to 24.3.0
#89
dependabot[bot]
closed
7 months ago
0
Update infernal container
#88
tgurbich
closed
8 months ago
0
Update README.md - eggnog db version
#87
mberacochea
closed
10 months ago
2
Add the --cpu flag for Sanntis
#86
mberacochea
closed
10 months ago
0
SanntiS floods CPUs
#85
lam-c
closed
6 months ago
1
KRAKEN2_BUILD cp *.txt permission error
#84
akques
opened
11 months ago
2
Interproscan error
#83
amardeepranu
opened
11 months ago
3
Prokka error
#82
amardeepranu
opened
11 months ago
3
Missing EBI profile
#81
amardeepranu
closed
10 months ago
1
Completeness and contamination missing from fetch_ncbi.py
#80
amardeepranu
opened
11 months ago
3
Can't fetch ena data with biome list
#79
amardeepranu
opened
11 months ago
1
Merge dev to a new release
#78
mberacochea
closed
11 months ago
0
Container image miss command `ps`
#77
lam-c
opened
11 months ago
10
Fetch singularity images for offline use
#76
lam-c
closed
10 months ago
3
Update README.md: fix dead links to download files
#75
KateSakharova
closed
11 months ago
1
Bug fix/organising script
#74
tgurbich
closed
11 months ago
0
dead links
#73
QingDAI0225
closed
11 months ago
1
Dev
#72
tgurbich
closed
11 months ago
0
Xlarge release staging
#71
tgurbich
closed
11 months ago
0
Add AMRFinderPlus referende DB download link in the README file.
#70
mberacochea
closed
12 months ago
0
No valid AMRFinder database is found
#69
akques
closed
12 months ago
1
Dev
#68
tgurbich
closed
1 year ago
0
Feature/xlarge readme
#67
tgurbich
closed
1 year ago
0
Merge DEV
#66
mberacochea
closed
1 year ago
0
Increate memory and cpus in some tools for largue catalogues.
#65
mberacochea
closed
1 year ago
0
Support for largue catalogues, >100K MAGs, where dRep requires too much memory
#64
mberacochea
closed
1 year ago
0
dereplication for large catalogues
#63
mberacochea
closed
1 year ago
0
Uniprot
#62
tgurbich
opened
1 year ago
0
Updating pre-existing catalog and functional profiling
#61
sarpiens
closed
11 months ago
3
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