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Hi !
My command is "java -jar GeMoMa-1.9.jar CLI GeMoMaPipeline threads=3 s=pre-extracted GeMoMa.Score=ReAlign AnnotationFinalizer.r=NO o=true t=Gallus_gallus.fa c=CRY4.fa tblastn=true"
But if I…
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There are couple of helpdesk tickets reporting the same issue that large dataset downloading stuck at 2GB.
https://extsd.oicr.on.ca/projects/ICGCSD/queues/custom/109/ICGCSD-6020
https://extsd.oicr.o…
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Greetings, I hope you are doing well!
I was trying to use TSSr in R, but I stumbled across an issue when trying to forge a BSgenome of my virus from NCBI genome, which I want to analyse.
Basically, …
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In this assignment each group will explore a dataviz tool (download, install, try out, and use it to create something), and present a brief demonstration/overview of the tool to the rest of the class …
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Currently synteny datasets are loaded into memory entirely. The Dot tool (https://dot.sandbox.bio/?coords=https://storage.googleapis.com/sandbox.bio/dot/gorilla_to_GRCh38.coords&index=https://storage.…
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The layout of labels in plasmid view looks rather horrible and needs fixing. This is mainly a problem when there are very many labels. Much too many labels will also throw an error.
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**Description of bug:**
Several modules produce plots where the x-axis is not scaled properly, to the point where the plots cannot be used in any way.
![qualimap_genome_fraction](https://user-imag…
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Hi,
I am providing my own chrom_sizes.txt file for juicer pre to dump a .hic file. The chromosome names in my file are like "chr1, chr2, chr3,...". However in the .hic file, the chromosome names ar…
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![image](https://user-images.githubusercontent.com/6160073/146287207-3ec26029-c720-4994-b75d-f16e77014064.png)
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Hello
I was looking for any documentation for LDAP (RemoteUsers). I couldn't find anything for Apollo 2 (except an open ticket #115). The current documentation only states that we can add this:
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