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Steps with room for improvement :`seq-tools`
Break down of time spent per test in `seq-tools`
|Time|Test|
|---|---|
|3:32:01|c608_bam_sanity|
|0:31:05|c681_fileSize_match|
|
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## Describe the bug
Fields which have clinical exception values (ie. `treatment_setting` = `Not applicable`) are reported as errors in the downloaded error report TSV file
## Steps To Reproduce
L…
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## Detailed Description
End goal is to have a ui to show submitted analyses(seq exp) and what wf have been done on these analyses if any
question is does our current gateway api let us query these inf…
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Draft copy in:
https://github.com/icgc-argo-workflows/dnaaln
Testing commands:
1. Full pipeline work through if sequencing files and payload are local
```
nextflow run main.nf -profile debug_…
edsu7 updated
1 month ago
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As identified in https://github.com/icgc-argo/roadmap/issues/1057, some filters produce 0 buckets inaccurately.
this ticket will serve as documentation log for the research into this issue, and to li…
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## Description of Issue
We have struggled in the past 6 months with creating/maintaining test data that is reliable to work with for development purposes. This was especially highlighted in the dono…
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Initial load of LUCA-KR doesn't show the additional page numbers for the table:
![image.png](https://images.zenhubusercontent.com/5bbe9c22307bc60241e3aa93/2a9d935a-dffb-45ce-a8bb-a73c7275bdc4)
Refres…
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Supporting documentation to help users of the ICGC 25K portal find relevant data references after the portal's shutdown later this month.
This will add a page to the ARGO doc's site that can be u…
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@lindaxiang to fill in details
Got a request from Lincoln's group to run Alignment + Sanger pipelines through their data:
- data size is ~30TB for ~30 donors
- each donor has 1 normal + multiple tu…
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