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cI have the following two questions that I would like to ask you.
1. Regarding the imzML format data downloaded from public datasets, can I use your method?
2. Can I process the .d file output from …
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Got following problem after double double clicking run.bat or command line. Anyone seen it before. JDK have been installed and re-installed. Attempts have been tries on win7sp1pro and win10. Outcomes …
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`exportImzMl` complains when attempting writing to an imzML file, here is a reproducible example (file attached
[massPeaksList.gz](https://github.com/sgibb/MALDIquantForeign/files/7594199/massPeaksL…
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@LachlanStuart this can be a perfect first task for serverless:
- take mol formula from a user
- pull data from imzML from S3 using serverless
- calculate rho_* and MSM for the images using serve…
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After upgrading to version 2.5.7, I found that the latest version of lithops is not uploaded to the VPC (the old version remains). I tried deleting the VPC to create a new one. In this case, the litho…
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Hi there,
Attempting to wrap HiT-MaP so it can be available on the Galaxy platform.
Running into a number of issues during execution using your provided docker image. Here is the first:
```
…
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When trying to upgrade to 2.5.6, I found this stack trace:
```
$ python script.py
2021-11-11 14:42:04,745 [INFO] lithops.config -- Lithops v2.5.6
2021-11-11 14:42:04,764 [INFO] lithops.storage.ba…
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In order to visualize the IMS data in concert with the AF/mxIF/PAS images, we need to re-process them so that we have the scale/translation factor available for overlaying the image. My ideal solutio…
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Following the tutorial here: https://github.com/mjoppich/pIMZ/blob/master/examples/IMZMLprocess.theo_weights.ipynb
`spectra0_orig = imze.get_region_array(0, makeNullLine=True)`
Executing this line g…
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Add Nextflow and HDIprep parser to input optional ibd file name so that it gets copied to the process' working directory