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Hi, I got this error when setting `isotope_error` with MSFraggerAdapter.
```
Invalid string parameter value '0,1,2' for parameter 'isotope_error' given! Valid values are: '0,1,2'
```
I checked…
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>> 3. Ok I'll file it if I get the example output working. I thought it might be because I'm putting waaaay too many unique Samples in there, but if you used it for the Fiebig study I guess they also …
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Greetings @levitsky,
Currently, I am trying to perform AA_Stat analysis using Open Search results. This Open Search was performed as per our discussion via email. The error is as following:
C:\U…
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Hi,
using the new philosopher 4.2.1, I have some problems with TMT16. Almost all proteins in the protein.tsv output have a quantification value of 0 for the different TMT channels.
When looking i…
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Dear all,
thanks for this very useful package!
Is there a way to extract the peak "charges" of MS1 spectras with rawrr::readSpectrum? It seems to only work for MS2 spectras at the moment.
Thanks a…
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The following is a brief, cascading outline of all contributions to thermochemistry:
- [x] G = H - T * S
- [x] H = U + kB * T
- [x] U = E(el) + E(ZPE) + E(vib) + E(rot) + E(trans)
- [x] …
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@bowring Long ago, when unravelling the detail of Expression dependencies, we found that columns such as "Total 206Pb/238U" for unknowns actually have a subtle dependency on the index isotope used for…
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Hi!
I am running into the same issue as #274. I am runnning philosopher with Comet, PeptideProphet, ProteinProphet, which all proceed without issue. When it gets up to FDR filtering, I get the error…
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Hi!
We are trying to run IceR
It all worked well until
[1] "2021-09-15 12:01:40 Addition of +1 isotope features finished"
Warning: Error in stats::predict: object 'fit_gam_mean' not found
…
Suz-S updated
2 years ago
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From Simon:
>Another thing that I noticed was the 'correction for natural abundance'. It seems to over-correct and remove genuine labelling from a 13C-incorporation experiment. Attached is a screensh…